Wall clock time and date at job start Tue Mar 31 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47654 * 240.00917 * 3 2 1 5 5 H 1.48502 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47047 * 120.00323 * 3 2 1 7 7 C 1.40027 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00723 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.79390 * 180.02562 * 9 7 2 11 11 C 1.38304 * 119.13421 * 180.02562 * 10 9 7 12 12 C 1.38702 * 118.66597 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49565 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57569 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00169 * 185.31372 * 14 13 12 16 16 O 1.21268 * 120.00118 * 354.86092 * 15 14 13 17 17 C 1.50696 * 119.99765 * 174.85064 * 15 14 13 18 18 H 1.09008 * 110.99360 * 32.76744 * 17 15 14 19 19 C 1.55153 * 111.16675 * 157.00294 * 17 15 14 20 20 C 1.52942 * 108.96370 * 159.36877 * 19 17 15 21 21 C 1.53716 * 112.48589 * 329.90147 * 20 19 17 22 22 S 1.83395 * 104.97029 * 2.82429 * 21 20 19 23 23 N 1.31931 * 120.85099 * 0.25262 * 13 12 11 24 24 H 0.96999 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.43201 * 0.04381 * 10 9 7 26 26 H 1.07991 * 120.67197 * 180.02562 * 11 10 9 27 27 H 1.07995 * 120.24937 * 179.97438 * 12 11 10 28 28 H 0.97001 * 119.99630 * 5.31642 * 14 13 12 29 29 H 1.08995 * 109.60089 * 39.43860 * 19 17 15 30 30 H 1.09000 * 109.60133 * 279.29917 * 19 17 15 31 31 H 1.08999 * 108.88863 * 209.10797 * 20 19 17 32 32 H 1.08998 * 108.88978 * 90.69238 * 20 19 17 33 33 H 1.09002 * 110.34049 * 121.70009 * 21 20 19 34 34 H 1.08996 * 110.33956 * 243.94859 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0005 11 6 1.3031 -4.8416 -0.0011 12 6 -0.0831 -4.7934 -0.0011 13 6 -0.7279 -3.5549 -0.0010 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7512 -2.3188 -0.1097 16 8 -2.1109 -1.2889 -0.1126 17 6 -4.2528 -2.2728 -0.2271 18 1 -4.7134 -3.0876 0.3318 19 6 -4.8086 -0.8978 0.2288 20 6 -6.2027 -0.7023 -0.3690 21 6 -6.3689 -1.4175 -1.7194 22 16 -4.7814 -2.2952 -1.9892 23 7 -0.0357 -2.4318 -0.0060 24 1 -0.4850 0.8400 0.0004 25 1 3.0884 -3.6561 0.0002 26 1 1.8212 -5.7891 -0.0007 27 1 -0.6592 -5.7068 -0.0019 28 1 -2.6346 -4.3230 0.0759 29 1 -4.1475 -0.1033 -0.1174 30 1 -4.8700 -0.8707 1.3167 31 1 -6.3797 0.3639 -0.5102 32 1 -6.9438 -1.0907 0.3295 33 1 -7.1925 -2.1299 -1.6720 34 1 -6.5403 -0.6914 -2.5141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:50 Heat of formation + Delta-G solvation = 19.640966 kcal Electronic energy + Delta-G solvation = -19281.362846 eV Core-core repulsion = 16306.090066 eV Total energy + Delta-G solvation = -2975.272780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34816 -37.61573 -35.60766 -34.09781 -33.00445 -30.43870 -30.10381 -28.74940 -25.83105 -25.18822 -22.31336 -21.32316 -20.53277 -19.33824 -17.87264 -16.80455 -16.52267 -16.06980 -14.84400 -14.71624 -14.44695 -14.31535 -14.18835 -13.65461 -13.24744 -12.92872 -12.61018 -12.39816 -12.10551 -11.85386 -11.71689 -11.29734 -11.08744 -10.95805 -10.65754 -10.64365 -10.46034 -9.94956 -9.88832 -9.65942 -9.10551 -9.00883 -7.96098 -7.62434 -7.21807 -6.97008 -6.13443 -4.39029 1.61552 2.28273 2.83203 3.11237 3.17329 3.19313 3.28554 3.70888 3.90662 4.07328 4.48259 4.68021 4.90710 4.93643 4.98606 5.15788 5.29761 5.48259 5.56733 5.79465 5.91199 6.04674 6.12710 6.27171 6.49719 6.67146 6.83532 6.85538 7.24113 7.55048 7.62050 7.82035 8.04272 8.19725 8.44986 8.73882 9.04987 9.19782 10.24400 10.49077 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.006434 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.184271 B = 4351.018650 C = 5681.707064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.657 5.657 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.304 4.304 11 C -0.036 4.036 12 C -0.356 4.356 13 C 0.372 3.628 14 N -0.661 5.661 15 C 0.492 3.508 16 O -0.389 6.389 17 C -0.064 4.064 18 H 0.105 0.895 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.077 4.077 22 S -0.253 6.253 23 N -0.474 5.474 24 H 0.273 0.727 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 -1.656 0.362 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.171 4.171 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.327 4.327 11 C -0.060 4.060 12 C -0.381 4.381 13 C 0.134 3.866 14 N -0.308 5.308 15 C 0.270 3.730 16 O -0.252 6.252 17 C -0.196 4.196 18 H 0.123 0.877 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.225 4.225 22 S -0.027 6.027 23 N -0.193 5.193 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.233 0.767 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.285 -0.279 -0.680 12.307 hybrid contribution -0.118 -0.337 1.012 1.073 sum -12.403 -0.615 0.331 12.423 Atomic orbital electron populations 1.70299 1.05791 1.27511 1.23949 1.26167 0.95128 1.00573 0.95211 0.86572 0.80197 0.81478 0.79657 1.19157 1.20400 1.19194 1.19546 0.94042 0.89376 1.42570 0.89987 1.18374 0.87119 0.91976 0.87913 1.21627 0.98567 0.93524 1.18999 1.20559 0.93146 0.96549 0.95782 1.20487 0.94818 0.94926 1.27909 1.18573 0.83054 0.91019 0.93965 1.43314 1.05249 1.08884 1.73359 1.19715 0.87177 0.85423 0.80651 1.91152 1.64036 1.30772 1.39228 1.24306 0.98224 1.02136 0.94924 0.87674 1.22321 0.95542 0.95698 1.01611 1.21947 0.97626 1.01888 0.94940 1.23965 0.96858 1.01262 1.00462 1.88121 1.24787 1.77378 1.12458 1.68671 1.07082 1.23212 1.20324 0.91557 0.88537 0.88585 0.89054 0.76686 0.88366 0.89986 0.90209 0.91205 0.89335 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.21 8.99 55.55 0.50 -17.71 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 3 Si 0.90 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.42 -11.77 9.14 -37.74 -0.34 -12.12 16 8 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 9 C 0.27 7.71 6.55 -85.00 -0.56 7.15 16 10 C -0.30 -7.75 9.83 -38.66 -0.38 -8.13 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.14 9.95 -38.89 -0.39 -8.53 16 13 C 0.37 9.24 7.43 -154.97 -1.15 8.09 16 14 N -0.66 -13.39 5.38 -11.40 -0.06 -13.45 16 15 C 0.49 10.01 7.10 -10.99 -0.08 9.93 16 16 O -0.39 -9.71 11.62 5.57 0.06 -9.64 16 17 C -0.06 -0.95 3.73 -26.75 -0.10 -1.05 16 18 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 19 C -0.11 -1.49 5.64 -25.62 -0.14 -1.64 16 20 C -0.13 -1.24 6.33 -26.39 -0.17 -1.41 16 21 C -0.08 -0.80 7.38 37.53 0.28 -0.52 16 22 S -0.25 -3.82 22.70 -107.50 -2.44 -6.26 16 23 N -0.47 -13.45 5.74 -10.26 -0.06 -13.51 16 24 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 25 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 26 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.40 6.37 8.70 -40.82 -0.36 6.02 16 29 H 0.10 1.58 7.28 -51.93 -0.38 1.21 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -32.64 299.19 -10.12 -42.76 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.08 Total: 6.96 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.53 Total: -8.00 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.38 Total: -44.66 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -2.44 Total: -6.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.64 -10.12 -42.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.400 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds