Wall clock time and date at job start Tue Mar 31 2020 00:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47654 * 240.00917 * 3 2 1 5 5 H 1.48502 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47047 * 120.00323 * 3 2 1 7 7 C 1.40027 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00723 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.79390 * 180.02562 * 9 7 2 11 11 C 1.38304 * 119.13421 * 180.02562 * 10 9 7 12 12 C 1.38702 * 118.66597 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49565 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57569 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00169 * 185.31372 * 14 13 12 16 16 O 1.21268 * 120.00118 * 354.86092 * 15 14 13 17 17 C 1.50696 * 119.99765 * 174.85064 * 15 14 13 18 18 H 1.09008 * 110.99360 * 32.76744 * 17 15 14 19 19 C 1.55153 * 111.16675 * 157.00294 * 17 15 14 20 20 C 1.52942 * 108.96370 * 159.36877 * 19 17 15 21 21 C 1.53716 * 112.48589 * 329.90147 * 20 19 17 22 22 S 1.83395 * 104.97029 * 2.82429 * 21 20 19 23 23 N 1.31931 * 120.85099 * 0.25262 * 13 12 11 24 24 H 0.96999 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.43201 * 0.04381 * 10 9 7 26 26 H 1.07991 * 120.67197 * 180.02562 * 11 10 9 27 27 H 1.07995 * 120.24937 * 179.97438 * 12 11 10 28 28 H 0.97001 * 119.99630 * 5.31642 * 14 13 12 29 29 H 1.08995 * 109.60089 * 39.43860 * 19 17 15 30 30 H 1.09000 * 109.60133 * 279.29917 * 19 17 15 31 31 H 1.08999 * 108.88863 * 209.10797 * 20 19 17 32 32 H 1.08998 * 108.88978 * 90.69238 * 20 19 17 33 33 H 1.09002 * 110.34049 * 121.70009 * 21 20 19 34 34 H 1.08996 * 110.33956 * 243.94859 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0005 11 6 1.3031 -4.8416 -0.0011 12 6 -0.0831 -4.7934 -0.0011 13 6 -0.7279 -3.5549 -0.0010 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7512 -2.3188 -0.1097 16 8 -2.1109 -1.2889 -0.1126 17 6 -4.2528 -2.2728 -0.2271 18 1 -4.7134 -3.0876 0.3318 19 6 -4.8086 -0.8978 0.2288 20 6 -6.2027 -0.7023 -0.3690 21 6 -6.3689 -1.4175 -1.7194 22 16 -4.7814 -2.2952 -1.9892 23 7 -0.0357 -2.4318 -0.0060 24 1 -0.4850 0.8400 0.0004 25 1 3.0884 -3.6561 0.0002 26 1 1.8212 -5.7891 -0.0007 27 1 -0.6592 -5.7068 -0.0019 28 1 -2.6346 -4.3230 0.0759 29 1 -4.1475 -0.1033 -0.1174 30 1 -4.8700 -0.8707 1.3167 31 1 -6.3797 0.3639 -0.5102 32 1 -6.9438 -1.0907 0.3295 33 1 -7.1925 -2.1299 -1.6720 34 1 -6.5403 -0.6914 -2.5141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:49 Heat of formation + Delta-G solvation = -0.284906 kcal Electronic energy + Delta-G solvation = -19282.226897 eV Core-core repulsion = 16306.090066 eV Total energy + Delta-G solvation = -2976.136831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04152 -39.39659 -36.68782 -35.89294 -34.86923 -32.27339 -31.61166 -30.33018 -27.57271 -26.49308 -23.95565 -23.14869 -21.82704 -20.83671 -19.65962 -18.31433 -18.02191 -17.55943 -16.50267 -16.28363 -15.98102 -15.77736 -15.53224 -15.29703 -14.70339 -14.61874 -14.08175 -13.81374 -13.64972 -13.27057 -12.88960 -12.74487 -12.63876 -12.58456 -12.37384 -12.30858 -11.80352 -11.54359 -11.51227 -10.95189 -10.87087 -10.78200 -9.91393 -9.15282 -8.85445 -8.75404 -8.06195 -6.42937 0.40835 0.96747 1.25463 1.31793 1.39115 1.50798 1.53484 2.20404 2.26141 2.31927 2.99513 3.45749 3.68248 3.86955 4.03853 4.08958 4.16404 4.19719 4.37730 4.60021 4.72885 4.78636 4.86664 4.94629 4.98966 5.04081 5.05339 5.22969 5.28125 5.66656 5.82078 5.91256 6.13054 6.34466 6.68829 6.81288 7.06200 7.58839 8.32016 8.55900 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.006434 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.184271 B = 4351.018650 C = 5681.707064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.236 3.764 10 C -0.328 4.328 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.349 3.651 14 N -0.652 5.652 15 C 0.482 3.518 16 O -0.441 6.441 17 C -0.046 4.046 18 H 0.141 0.859 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.056 4.056 22 S -0.322 6.322 23 N -0.508 5.508 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.420 0.580 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 -2.451 0.703 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.214 4.214 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.351 4.351 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.110 3.890 14 N -0.301 5.301 15 C 0.263 3.737 16 O -0.307 6.307 17 C -0.178 4.178 18 H 0.159 0.841 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.204 4.204 22 S -0.097 6.097 23 N -0.228 5.228 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.257 0.743 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.277 -1.131 -0.340 14.326 hybrid contribution 0.404 -0.258 0.888 1.009 sum -13.873 -1.389 0.548 13.953 Atomic orbital electron populations 1.70501 1.07303 1.28097 1.25077 1.27033 0.96030 1.03994 0.94364 0.85385 0.78678 0.76482 0.79881 1.18615 1.19789 1.18306 1.19884 0.94480 0.90457 1.44803 0.89568 1.18883 0.87919 0.93446 0.88686 1.21817 0.99255 0.93808 1.20225 1.21036 0.93478 0.97396 0.93912 1.20972 0.95276 0.95688 1.25287 1.19113 0.84941 0.91201 0.93711 1.43337 1.03830 1.10212 1.72738 1.20652 0.89489 0.84564 0.78957 1.91146 1.65951 1.32389 1.41187 1.24182 0.93984 1.04447 0.95151 0.84109 1.22335 0.96827 0.93430 1.02520 1.21919 0.95782 1.02898 0.95080 1.24143 0.93923 1.01351 1.00957 1.88355 1.29147 1.78664 1.13514 1.68643 1.07411 1.25310 1.21400 0.91862 0.87649 0.84458 0.85149 0.74311 0.92187 0.88772 0.89021 0.88011 0.86417 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.27 8.99 21.84 0.20 -40.08 16 2 C 0.01 0.62 5.50 85.29 0.47 1.09 16 3 Si 0.97 41.23 29.56 68.60 2.03 43.26 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.47 -26.97 9.14 23.47 0.21 -26.75 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.24 13.94 6.55 40.20 0.26 14.21 16 10 C -0.33 -16.95 9.83 22.86 0.22 -16.73 16 11 C -0.03 -1.52 10.15 22.40 0.23 -1.29 16 12 C -0.35 -15.32 9.95 22.72 0.23 -15.09 16 13 C 0.35 17.45 7.43 133.23 0.99 18.44 16 14 N -0.65 -26.28 5.38 -308.39 -1.66 -27.94 16 15 C 0.48 19.94 7.10 87.66 0.62 20.56 16 16 O -0.44 -23.06 11.62 -2.99 -0.03 -23.09 16 17 C -0.05 -1.33 3.73 30.58 0.11 -1.21 16 18 H 0.14 2.99 8.14 -2.38 -0.02 2.97 16 19 C -0.11 -2.84 5.64 31.31 0.18 -2.66 16 20 C -0.12 -1.95 6.33 30.82 0.20 -1.75 16 21 C -0.06 -0.98 7.38 72.22 0.53 -0.45 16 22 S -0.32 -9.40 22.70 -56.49 -1.28 -10.68 16 23 N -0.51 -29.89 5.74 -186.37 -1.07 -30.96 16 24 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 25 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 26 H 0.14 4.91 8.06 -2.92 -0.02 4.88 16 27 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.42 12.74 8.70 -92.71 -0.81 11.93 16 29 H 0.06 2.00 7.28 -2.39 -0.02 1.98 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -76.25 299.19 2.75 -73.50 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.32 Total: 27.63 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 4.26 Total: -11.64 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -2.53 Total: -98.97 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.03 Total: -23.09 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.28 Total: -10.68 kcal Total: -76.25 2.75 -73.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.217 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds