Wall clock time and date at job start Tue Mar 31 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47467 * 300.00444 * 3 2 1 6 6 H 1.48497 * 109.47265 * 60.00513 * 3 2 1 7 7 C 1.38653 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99991 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.35743 * 117.00341 * 185.54683 * 9 7 2 11 11 C 1.38938 * 120.04295 * 185.88314 * 10 9 7 12 12 C 1.38106 * 120.04188 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12522 * 0.04949 * 12 11 10 14 14 C 1.38779 * 120.07965 * 359.97438 * 13 12 11 15 15 O 1.35926 * 120.02064 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95962 * 15 14 13 17 17 O 1.20827 * 120.00450 * 355.08132 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 O 1.42901 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.42900 * 113.99875 * 180.02562 * 19 18 16 21 21 C 1.53004 * 117.49240 * 218.62223 * 20 19 18 22 22 C 1.52996 * 117.49950 * 150.00386 * 20 19 18 23 23 C 1.38616 * 119.95833 * 359.97438 * 14 13 12 24 24 H 0.97003 * 119.99595 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.97561 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.94116 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96114 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46814 * 300.00323 * 18 16 15 29 29 H 1.09007 * 109.46664 * 60.00018 * 18 16 15 30 30 H 1.08994 * 115.54989 * 4.32479 * 20 19 18 31 31 H 1.08988 * 117.50116 * 359.97438 * 21 20 19 32 32 H 1.09006 * 117.49225 * 145.01922 * 21 20 19 33 33 H 1.09000 * 117.49587 * 214.97868 * 22 20 19 34 34 H 1.09000 * 117.49762 * 359.96649 * 22 20 19 35 35 H 1.08005 * 120.06073 * 179.72186 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0690 -3.5041 0.1158 11 6 1.4544 -4.7448 0.0005 12 6 2.2017 -5.9003 0.1184 13 6 3.5621 -5.8258 0.3523 14 6 4.1812 -4.5893 0.4688 15 8 5.5190 -4.5175 0.6983 16 6 5.9087 -4.0080 1.8778 17 8 5.0884 -3.5567 2.6416 18 6 7.3692 -3.9988 2.2491 19 8 7.5285 -3.4108 3.5417 20 6 8.8838 -3.3526 3.9908 21 6 9.1496 -3.6286 5.4721 22 6 9.2697 -2.2046 4.9256 23 6 3.4346 -3.4274 0.3501 24 1 -0.4850 0.8401 0.0004 25 1 0.3916 -4.8057 -0.1815 26 1 1.7223 -6.8638 0.0280 27 1 4.1438 -6.7311 0.4444 28 1 7.7461 -5.0215 2.2665 29 1 7.9272 -3.4184 1.5142 30 1 9.6317 -3.6906 3.2735 31 1 8.2907 -3.8540 6.1040 32 1 10.0725 -4.1484 5.7294 33 1 10.2715 -1.7874 4.8235 34 1 8.4898 -1.4933 5.1977 35 1 3.9139 -2.4642 0.4450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891613284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:17 Heat of formation + Delta-G solvation = -81.636636 kcal Electronic energy + Delta-G solvation = -20704.955066 eV Core-core repulsion = 17250.244938 eV Total energy + Delta-G solvation = -3454.710128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96192 -39.04271 -38.55219 -37.00623 -35.74665 -35.09754 -32.30528 -30.08772 -29.05712 -28.20588 -25.41775 -23.05681 -22.66846 -22.24743 -21.65217 -20.57024 -18.31974 -17.95322 -17.43246 -17.12470 -16.49406 -15.94980 -15.21732 -15.05491 -15.00019 -14.40815 -14.16079 -13.98311 -13.64662 -13.41140 -13.02542 -12.63594 -12.17553 -11.98410 -11.81046 -11.70241 -11.56117 -11.26416 -11.03694 -10.89483 -10.80212 -10.46219 -10.38436 -10.23697 -9.53784 -9.48499 -8.87126 -8.16238 -7.35609 -6.48070 -4.06970 1.66243 2.19768 2.25545 2.59595 3.12384 3.14702 3.20147 3.53103 3.64179 3.95648 4.44192 4.47244 4.63607 4.70108 4.87719 4.93266 4.95280 5.07318 5.15787 5.20683 5.36695 5.58827 5.65332 5.77961 5.87888 5.99114 6.12821 6.24944 6.55098 6.77624 6.88643 7.00426 7.08208 7.12721 7.32822 7.59245 7.95578 8.11368 8.97305 9.63179 10.69491 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.004946 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.378287 B = 5660.213044 C = 7401.929460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.170 6.170 10 C 0.163 3.837 11 C -0.187 4.187 12 C -0.065 4.065 13 C -0.211 4.211 14 C 0.119 3.881 15 O -0.294 6.294 16 C 0.448 3.552 17 O -0.458 6.458 18 C 0.079 3.921 19 O -0.334 6.334 20 C 0.013 3.987 21 C -0.186 4.186 22 C -0.181 4.181 23 C -0.229 4.229 24 H 0.271 0.729 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.391 -8.148 4.373 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.207 4.207 12 C -0.083 4.083 13 C -0.230 4.230 14 C 0.078 3.922 15 O -0.209 6.209 16 C 0.289 3.711 17 O -0.340 6.340 18 C 0.001 3.999 19 O -0.253 6.253 20 C -0.045 4.045 21 C -0.224 4.224 22 C -0.218 4.218 23 C -0.249 4.249 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.506 -7.680 4.698 18.801 hybrid contribution 0.647 0.825 -0.056 1.050 sum 17.153 -6.855 4.642 19.046 Atomic orbital electron populations 1.70048 1.05948 1.27720 1.45624 1.25294 0.95873 0.98858 0.96293 0.85638 0.79221 0.80230 0.78331 1.19083 1.19990 1.19966 1.21367 0.91786 0.80748 1.52842 0.89154 1.84008 1.34015 1.11447 1.77784 1.19137 0.89415 0.88369 0.92190 1.20333 1.00386 0.89891 1.10050 1.20479 0.92534 0.97270 0.98029 1.20411 0.94831 0.95041 1.12725 1.18239 0.79446 0.93744 1.00771 1.84457 1.24902 1.75507 1.36081 1.23407 0.91627 0.76151 0.79928 1.90785 1.54135 1.39624 1.49483 1.21672 0.90480 1.00742 0.86961 1.87951 1.24470 1.80985 1.31864 1.22722 0.84253 1.04533 0.93002 1.23422 1.03584 0.98982 0.96382 1.23374 1.03039 0.92417 1.02958 1.21239 0.94829 0.98115 1.10723 0.91941 0.85838 0.85888 0.86595 0.88547 0.88521 0.86630 0.87910 0.88034 0.87924 0.87807 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.17 5.49 -17.51 -0.10 1.08 16 3 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -11.35 9.44 30.89 0.29 -11.05 16 8 H 0.09 2.49 5.30 -52.49 -0.28 2.21 16 9 O -0.17 -4.97 9.76 0.07 0.00 -4.97 16 10 C 0.16 4.12 6.64 -39.13 -0.26 3.86 16 11 C -0.19 -4.00 9.99 -39.37 -0.39 -4.39 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.56 16 13 C -0.21 -3.87 9.99 -39.38 -0.39 -4.26 16 14 C 0.12 2.45 5.46 -39.24 -0.21 2.24 16 15 O -0.29 -5.26 10.05 -23.62 -0.24 -5.49 16 16 C 0.45 7.76 7.85 36.01 0.28 8.04 16 17 O -0.46 -10.10 15.57 -25.48 -0.40 -10.50 16 18 C 0.08 0.92 6.40 36.01 0.23 1.15 16 19 O -0.33 -4.56 10.13 -55.18 -0.56 -5.12 16 20 C 0.01 0.12 6.44 -26.73 -0.17 -0.05 16 21 C -0.19 -1.56 10.48 -26.73 -0.28 -1.84 16 22 C -0.18 -1.57 10.48 -26.73 -0.28 -1.85 16 23 C -0.23 -5.47 7.99 -39.25 -0.31 -5.78 16 24 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 26 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.12 0.73 7.93 -51.93 -0.41 0.32 16 31 H 0.10 0.98 8.14 -51.94 -0.42 0.56 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 3.28 5.72 -52.48 -0.30 2.98 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -34.73 317.00 -6.61 -41.33 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.93 Total: 2.98 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.00 Total: -14.43 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.76 Total: -24.77 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.19 Total: -26.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.73 -6.61 -41.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891613284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.304 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds