Wall clock time and date at job start Tue Mar 31 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47467 * 300.00444 * 3 2 1 6 6 H 1.48497 * 109.47265 * 60.00513 * 3 2 1 7 7 C 1.38653 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99991 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.35743 * 117.00341 * 185.54683 * 9 7 2 11 11 C 1.38938 * 120.04295 * 185.88314 * 10 9 7 12 12 C 1.38106 * 120.04188 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12522 * 0.04949 * 12 11 10 14 14 C 1.38779 * 120.07965 * 359.97438 * 13 12 11 15 15 O 1.35926 * 120.02064 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95962 * 15 14 13 17 17 O 1.20827 * 120.00450 * 355.08132 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 O 1.42901 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.42900 * 113.99875 * 180.02562 * 19 18 16 21 21 C 1.53004 * 117.49240 * 218.62223 * 20 19 18 22 22 C 1.52996 * 117.49950 * 150.00386 * 20 19 18 23 23 C 1.38616 * 119.95833 * 359.97438 * 14 13 12 24 24 H 0.97003 * 119.99595 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.97561 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.94116 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96114 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46814 * 300.00323 * 18 16 15 29 29 H 1.09007 * 109.46664 * 60.00018 * 18 16 15 30 30 H 1.08994 * 115.54989 * 4.32479 * 20 19 18 31 31 H 1.08988 * 117.50116 * 359.97438 * 21 20 19 32 32 H 1.09006 * 117.49225 * 145.01922 * 21 20 19 33 33 H 1.09000 * 117.49587 * 214.97868 * 22 20 19 34 34 H 1.09000 * 117.49762 * 359.96649 * 22 20 19 35 35 H 1.08005 * 120.06073 * 179.72186 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0690 -3.5041 0.1158 11 6 1.4544 -4.7448 0.0005 12 6 2.2017 -5.9003 0.1184 13 6 3.5621 -5.8258 0.3523 14 6 4.1812 -4.5893 0.4688 15 8 5.5190 -4.5175 0.6983 16 6 5.9087 -4.0080 1.8778 17 8 5.0884 -3.5567 2.6416 18 6 7.3692 -3.9988 2.2491 19 8 7.5285 -3.4108 3.5417 20 6 8.8838 -3.3526 3.9908 21 6 9.1496 -3.6286 5.4721 22 6 9.2697 -2.2046 4.9256 23 6 3.4346 -3.4274 0.3501 24 1 -0.4850 0.8401 0.0004 25 1 0.3916 -4.8057 -0.1815 26 1 1.7223 -6.8638 0.0280 27 1 4.1438 -6.7311 0.4444 28 1 7.7461 -5.0215 2.2665 29 1 7.9272 -3.4184 1.5142 30 1 9.6317 -3.6906 3.2735 31 1 8.2907 -3.8540 6.1040 32 1 10.0725 -4.1484 5.7294 33 1 10.2715 -1.7874 4.8235 34 1 8.4898 -1.4933 5.1977 35 1 3.9139 -2.4642 0.4450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891613284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:17 Heat of formation + Delta-G solvation = -104.195276 kcal Electronic energy + Delta-G solvation = -20705.933282 eV Core-core repulsion = 17250.244938 eV Total energy + Delta-G solvation = -3455.688344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.44217 -40.63818 -39.65029 -38.55205 -37.39697 -35.92975 -34.37548 -31.65111 -30.77095 -29.43161 -27.46686 -24.54708 -23.38584 -23.30488 -22.95517 -22.10050 -20.16492 -19.59360 -18.56292 -18.34093 -17.87057 -17.46492 -16.90021 -16.47318 -16.15343 -15.86171 -15.60698 -15.49045 -15.18364 -14.77274 -14.55296 -14.32752 -13.77452 -13.33586 -13.04619 -12.99753 -12.76209 -12.57098 -12.51734 -12.41816 -12.19551 -12.00236 -11.78673 -11.48244 -11.39478 -10.88769 -10.23460 -9.82152 -9.17807 -8.56581 -6.25671 0.07184 0.52773 0.93089 1.27400 1.30729 1.37901 1.45760 2.10276 2.62827 2.75658 2.88110 3.03866 3.33645 3.49276 3.88899 3.97113 3.98394 4.04713 4.15816 4.19633 4.25396 4.29664 4.48788 4.53446 4.74210 4.76394 4.91854 4.98243 5.01151 5.23373 5.28874 5.41648 5.48296 5.52339 5.90939 5.94902 6.06909 6.66204 6.87402 7.62765 8.66142 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.004946 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.378287 B = 5660.213044 C = 7401.929460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.016 4.016 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.418 4.418 8 H 0.088 0.912 9 O -0.221 6.221 10 C 0.125 3.875 11 C -0.195 4.195 12 C -0.047 4.047 13 C -0.186 4.186 14 C 0.109 3.891 15 O -0.283 6.283 16 C 0.445 3.555 17 O -0.517 6.517 18 C 0.087 3.913 19 O -0.378 6.378 20 C 0.003 3.997 21 C -0.184 4.184 22 C -0.189 4.189 23 C -0.250 4.250 24 H 0.276 0.724 25 H 0.132 0.868 26 H 0.179 0.821 27 H 0.164 0.836 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.615 -10.595 4.193 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.214 4.214 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.106 0.894 9 O -0.127 6.127 10 C 0.074 3.926 11 C -0.214 4.214 12 C -0.064 4.064 13 C -0.204 4.204 14 C 0.068 3.932 15 O -0.199 6.199 16 C 0.289 3.711 17 O -0.402 6.402 18 C 0.011 3.989 19 O -0.298 6.298 20 C -0.054 4.054 21 C -0.221 4.221 22 C -0.226 4.226 23 C -0.270 4.270 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.776 -10.187 4.509 22.697 hybrid contribution -0.212 1.238 0.058 1.257 sum 19.564 -8.949 4.567 21.993 Atomic orbital electron populations 1.70161 1.07746 1.29002 1.48023 1.26533 0.96934 1.02478 0.95479 0.84596 0.77831 0.75008 0.79152 1.18444 1.18124 1.19039 1.21701 0.92003 0.81689 1.53974 0.89410 1.83956 1.35347 1.12432 1.80998 1.19752 0.90283 0.88755 0.93821 1.20738 1.01364 0.89663 1.09647 1.21113 0.92332 0.98130 0.94861 1.21068 0.95313 0.95538 1.08500 1.18479 0.80686 0.93647 1.00398 1.84486 1.23146 1.75401 1.36834 1.24773 0.93791 0.73981 0.78541 1.90773 1.56159 1.42255 1.51060 1.21975 0.85929 1.03847 0.87141 1.87898 1.27410 1.81632 1.32816 1.23161 0.83151 1.04936 0.94105 1.23490 1.04046 0.98890 0.95650 1.23452 1.03617 0.92261 1.03238 1.21197 0.94889 0.98520 1.12352 0.91474 0.85055 0.80328 0.81804 0.84031 0.85174 0.82754 0.89960 0.85121 0.85300 0.90337 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.24 13.67 21.61 0.30 -56.95 16 2 C -0.02 -0.93 5.49 84.83 0.47 -0.47 16 3 Si 1.02 45.30 29.55 68.60 2.03 47.32 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.42 -25.97 9.44 67.92 0.64 -25.33 16 8 H 0.09 5.26 5.30 -2.91 -0.02 5.24 16 9 O -0.22 -13.92 9.76 -22.66 -0.22 -14.14 16 10 C 0.12 6.60 6.64 22.56 0.15 6.75 16 11 C -0.19 -8.28 9.99 22.41 0.22 -8.06 16 12 C -0.05 -1.50 10.03 22.24 0.22 -1.28 16 13 C -0.19 -6.07 9.99 22.40 0.22 -5.84 16 14 C 0.11 4.40 5.46 22.49 0.12 4.52 16 15 O -0.28 -9.64 10.05 4.54 0.05 -9.59 16 16 C 0.45 14.97 7.85 71.24 0.56 15.53 16 17 O -0.52 -23.41 15.57 28.39 0.44 -22.97 16 18 C 0.09 1.76 6.40 71.24 0.46 2.22 16 19 O -0.38 -9.75 10.13 -129.90 -1.32 -11.07 16 20 C 0.00 0.05 6.44 30.59 0.20 0.25 16 21 C -0.18 -2.70 10.48 30.59 0.32 -2.38 16 22 C -0.19 -2.99 10.48 30.59 0.32 -2.67 16 23 C -0.25 -12.42 7.99 22.49 0.18 -12.24 16 24 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 26 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 27 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.14 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.16 1.20 7.93 -2.39 -0.02 1.18 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 5.66 5.72 -2.91 -0.02 5.64 16 Total: -1.00 -85.03 317.00 6.47 -78.56 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.11 Total: 17.84 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.08 Total: -29.00 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.30 Total: -56.95 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.05 Total: -57.77 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -85.03 6.47 -78.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891613284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.637 kcal (2) G-P(sol) polarization free energy of solvation -85.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds