Wall clock time and date at job start Tue Mar 31 2020 00:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00052 * 3 2 1 5 5 H 1.48501 * 109.47316 * 30.00045 * 3 2 1 6 6 H 1.48500 * 109.47364 * 150.00408 * 3 2 1 7 7 C 1.38895 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99835 * 170.38181 * 7 2 1 9 9 N 1.37212 * 120.00026 * 350.38193 * 7 2 1 10 10 C 1.34773 * 119.99864 * 156.49901 * 9 7 2 11 11 O 1.21267 * 120.00048 * 184.93027 * 10 9 7 12 12 C 1.50701 * 120.00062 * 4.92730 * 10 9 7 13 13 H 1.08997 * 109.99221 * 29.72844 * 12 10 9 14 14 C 1.53854 * 109.97411 * 150.99469 * 12 10 9 15 15 C 1.54279 * 108.92523 * 166.61940 * 14 12 10 16 16 S 1.83095 * 104.65021 * 332.04340 * 15 14 12 17 17 C 1.55137 * 109.97686 * 268.45854 * 12 10 9 18 18 C 1.39426 * 119.99961 * 336.49347 * 9 7 2 19 19 C 1.39060 * 119.70158 * 276.09561 * 18 9 7 20 20 C 1.38379 * 119.10011 * 179.97438 * 19 18 9 21 21 C 1.38828 * 118.49315 * 0.02562 * 20 19 18 22 22 C 1.38147 * 119.30944 * 359.97438 * 21 20 19 23 23 N 1.31875 * 120.85207 * 359.75057 * 22 21 20 24 24 H 0.96993 * 119.99583 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.61475 * 46.69652 * 14 12 10 26 26 H 1.09003 * 109.61070 * 286.53750 * 14 12 10 27 27 H 1.09001 * 110.40138 * 90.84108 * 15 14 12 28 28 H 1.09007 * 110.39928 * 213.13638 * 15 14 12 29 29 H 1.09001 * 110.85457 * 80.34578 * 17 12 10 30 30 H 1.08999 * 111.03237 * 316.78135 * 17 12 10 31 31 H 1.08001 * 120.44486 * 359.95823 * 19 18 9 32 32 H 1.07999 * 120.75410 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.34108 * 179.97438 * 21 20 19 34 34 H 1.07997 * 119.56949 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.6999 7 6 2.0086 -1.2029 -0.0005 8 1 3.0773 -1.2094 -0.1568 9 7 1.3370 -2.3829 0.1975 10 6 1.8603 -3.5400 -0.2539 11 8 1.2269 -4.5697 -0.1589 12 6 3.2325 -3.5542 -0.8766 13 1 3.8469 -2.7655 -0.4425 14 6 3.8979 -4.9230 -0.6511 15 6 5.1340 -5.0355 -1.5673 16 16 4.7464 -3.9653 -3.0015 17 6 3.1203 -3.3547 -2.4110 18 6 0.1133 -2.3849 0.8657 19 6 0.0874 -2.4083 2.2558 20 6 -1.1340 -2.4095 2.9063 21 6 -2.2920 -2.3876 2.1408 22 6 -2.1917 -2.3650 0.7632 23 7 -1.0134 -2.3590 0.1709 24 1 -0.4849 0.8400 0.0004 25 1 3.1911 -5.7173 -0.8911 26 1 4.2053 -5.0131 0.3908 27 1 6.0233 -4.6727 -1.0519 28 1 5.2763 -6.0674 -1.8885 29 1 2.9889 -2.3009 -2.6567 30 1 2.3078 -3.9521 -2.8248 31 1 1.0081 -2.4256 2.8201 32 1 -1.1853 -2.4278 3.9849 33 1 -3.2611 -2.3883 2.6174 34 1 -3.0898 -2.3476 0.1636 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:02 Heat of formation + Delta-G solvation = 17.848192 kcal Electronic energy + Delta-G solvation = -19773.460107 eV Core-core repulsion = 16798.109586 eV Total energy + Delta-G solvation = -2975.350520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83120 -38.29173 -35.29769 -34.66316 -31.79776 -31.43131 -29.94871 -28.84256 -25.20033 -24.92964 -22.94509 -22.53154 -20.88350 -19.18186 -17.92562 -16.87819 -16.11900 -15.60643 -15.53784 -14.92436 -14.83650 -14.36553 -14.02156 -13.40116 -13.26422 -13.07960 -12.48915 -12.36839 -12.18919 -11.95159 -11.69023 -11.57838 -11.27482 -11.21145 -11.02106 -10.86433 -10.53979 -10.23688 -9.90103 -9.60112 -8.91785 -8.74972 -8.51338 -8.07109 -7.87300 -7.43857 -6.41116 -4.17464 2.08982 2.12785 2.29443 2.60060 3.05114 3.14265 3.16226 3.58647 3.91884 4.29974 4.80487 4.92404 5.00906 5.11953 5.27950 5.39315 5.53405 5.54762 5.58659 5.72700 5.85362 5.94821 6.01663 6.04697 6.08531 6.31912 6.35750 6.50889 6.55923 6.91826 6.96304 7.25256 7.34981 7.77558 8.22099 8.89136 9.12343 9.24393 9.64578 10.55243 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.007451 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.416172 B = 3756.920615 C = 4911.385312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.044 3.956 3 Si 0.922 3.078 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.354 4.354 8 H 0.107 0.893 9 N -0.402 5.402 10 C 0.489 3.511 11 O -0.587 6.587 12 C -0.094 4.094 13 H 0.106 0.894 14 C -0.116 4.116 15 C -0.067 4.067 16 S -0.313 6.313 17 C -0.039 4.039 18 C 0.437 3.563 19 C -0.175 4.175 20 C -0.080 4.080 21 C -0.205 4.205 22 C 0.112 3.888 23 N -0.436 5.436 24 H 0.271 0.729 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -3.253 2.516 5.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.164 4.164 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.124 0.876 9 N -0.120 5.120 10 C 0.276 3.724 11 O -0.470 6.470 12 C -0.117 4.117 13 H 0.124 0.876 14 C -0.155 4.155 15 C -0.215 4.215 16 S -0.087 6.087 17 C -0.188 4.188 18 C 0.212 3.788 19 C -0.197 4.197 20 C -0.106 4.106 21 C -0.225 4.225 22 C -0.048 4.048 23 N -0.146 5.146 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.547 -3.352 0.631 4.921 hybrid contribution -0.378 1.050 1.949 2.246 sum 3.170 -2.301 2.580 4.690 Atomic orbital electron populations 1.69898 1.05708 1.27610 1.44800 1.25358 0.95538 0.99875 0.95602 0.86008 0.79373 0.81146 0.78731 1.19974 1.20762 1.19178 1.19565 0.92835 0.82037 1.53610 0.87565 1.41118 1.15429 1.06926 1.48488 1.19796 0.88136 0.83522 0.80945 1.90577 1.62995 1.33204 1.60266 1.22096 0.96200 0.98656 0.94737 0.87585 1.22184 0.95349 0.97947 1.00015 1.23940 1.01031 1.01111 0.95387 1.87326 1.27916 1.60437 1.33026 1.24088 0.94174 1.05263 0.95228 1.17703 0.85663 0.88585 0.86859 1.21808 0.98278 1.04627 0.95011 1.21142 0.92289 0.98017 0.99174 1.21814 0.98326 1.06611 0.95744 1.22264 0.94955 0.95827 0.91715 1.67216 0.97738 1.08312 1.41367 0.91799 0.89428 0.90118 0.89211 0.88958 0.86867 0.89045 0.86225 0.86243 0.86376 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.11 10.38 55.49 0.58 -21.54 16 2 C 0.04 1.09 5.30 -17.48 -0.09 1.00 16 3 Si 0.92 19.09 29.56 -169.99 -5.03 14.06 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.35 -8.58 9.09 -14.90 -0.14 -8.71 16 8 H 0.11 2.37 5.92 -52.49 -0.31 2.06 16 9 N -0.40 -9.94 2.73 -60.71 -0.17 -10.10 16 10 C 0.49 11.37 6.70 -10.99 -0.07 11.30 16 11 O -0.59 -15.13 15.92 5.57 0.09 -15.04 16 12 C -0.09 -1.75 2.27 -90.20 -0.20 -1.96 16 13 H 0.11 1.93 6.20 -51.93 -0.32 1.61 16 14 C -0.12 -1.83 5.55 -25.62 -0.14 -1.97 16 15 C -0.07 -0.89 7.34 37.83 0.28 -0.62 16 16 S -0.31 -5.02 23.26 -107.50 -2.50 -7.52 16 17 C -0.04 -0.71 6.73 38.29 0.26 -0.45 16 18 C 0.44 10.91 3.43 -154.64 -0.53 10.38 16 19 C -0.17 -3.85 10.02 -39.22 -0.39 -4.25 16 20 C -0.08 -1.49 10.17 -39.31 -0.40 -1.89 16 21 C -0.20 -3.72 10.11 -39.40 -0.40 -4.12 16 22 C 0.11 2.34 11.18 -17.57 -0.20 2.15 16 23 N -0.44 -10.96 8.98 -12.34 -0.11 -11.07 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.09 1.51 7.42 -51.93 -0.39 1.12 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 30 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 31 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -30.01 300.77 -8.59 -38.61 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.96 Total: 7.22 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.03 Total: 0.85 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.30 Total: -42.71 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.50 Total: -7.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.01 -8.59 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.454 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds