Wall clock time and date at job start Tue Mar 31 2020 00:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00052 * 3 2 1 5 5 H 1.48501 * 109.47316 * 30.00045 * 3 2 1 6 6 H 1.48500 * 109.47364 * 150.00408 * 3 2 1 7 7 C 1.38895 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99835 * 170.38181 * 7 2 1 9 9 N 1.37212 * 120.00026 * 350.38193 * 7 2 1 10 10 C 1.34773 * 119.99864 * 156.49901 * 9 7 2 11 11 O 1.21267 * 120.00048 * 184.93027 * 10 9 7 12 12 C 1.50701 * 120.00062 * 4.92730 * 10 9 7 13 13 H 1.08997 * 109.99221 * 29.72844 * 12 10 9 14 14 C 1.53854 * 109.97411 * 150.99469 * 12 10 9 15 15 C 1.54279 * 108.92523 * 166.61940 * 14 12 10 16 16 S 1.83095 * 104.65021 * 332.04340 * 15 14 12 17 17 C 1.55137 * 109.97686 * 268.45854 * 12 10 9 18 18 C 1.39426 * 119.99961 * 336.49347 * 9 7 2 19 19 C 1.39060 * 119.70158 * 276.09561 * 18 9 7 20 20 C 1.38379 * 119.10011 * 179.97438 * 19 18 9 21 21 C 1.38828 * 118.49315 * 0.02562 * 20 19 18 22 22 C 1.38147 * 119.30944 * 359.97438 * 21 20 19 23 23 N 1.31875 * 120.85207 * 359.75057 * 22 21 20 24 24 H 0.96993 * 119.99583 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.61475 * 46.69652 * 14 12 10 26 26 H 1.09003 * 109.61070 * 286.53750 * 14 12 10 27 27 H 1.09001 * 110.40138 * 90.84108 * 15 14 12 28 28 H 1.09007 * 110.39928 * 213.13638 * 15 14 12 29 29 H 1.09001 * 110.85457 * 80.34578 * 17 12 10 30 30 H 1.08999 * 111.03237 * 316.78135 * 17 12 10 31 31 H 1.08001 * 120.44486 * 359.95823 * 19 18 9 32 32 H 1.07999 * 120.75410 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.34108 * 179.97438 * 21 20 19 34 34 H 1.07997 * 119.56949 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.6999 7 6 2.0086 -1.2029 -0.0005 8 1 3.0773 -1.2094 -0.1568 9 7 1.3370 -2.3829 0.1975 10 6 1.8603 -3.5400 -0.2539 11 8 1.2269 -4.5697 -0.1589 12 6 3.2325 -3.5542 -0.8766 13 1 3.8469 -2.7655 -0.4425 14 6 3.8979 -4.9230 -0.6511 15 6 5.1340 -5.0355 -1.5673 16 16 4.7464 -3.9653 -3.0015 17 6 3.1203 -3.3547 -2.4110 18 6 0.1133 -2.3849 0.8657 19 6 0.0874 -2.4083 2.2558 20 6 -1.1340 -2.4095 2.9063 21 6 -2.2920 -2.3876 2.1408 22 6 -2.1917 -2.3650 0.7632 23 7 -1.0134 -2.3590 0.1709 24 1 -0.4849 0.8400 0.0004 25 1 3.1911 -5.7173 -0.8911 26 1 4.2053 -5.0131 0.3908 27 1 6.0233 -4.6727 -1.0519 28 1 5.2763 -6.0674 -1.8885 29 1 2.9889 -2.3009 -2.6567 30 1 2.3078 -3.9521 -2.8248 31 1 1.0081 -2.4256 2.8201 32 1 -1.1853 -2.4278 3.9849 33 1 -3.2611 -2.3883 2.6174 34 1 -3.0898 -2.3476 0.1636 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892470668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:01 Heat of formation + Delta-G solvation = 0.800584 kcal Electronic energy + Delta-G solvation = -19774.199346 eV Core-core repulsion = 16798.109586 eV Total energy + Delta-G solvation = -2976.089760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53077 -39.93444 -36.92226 -36.29939 -33.64437 -33.03477 -31.42889 -30.30278 -27.02222 -26.42951 -24.43893 -24.12104 -22.37584 -20.92964 -19.55991 -18.53551 -17.45407 -17.23811 -17.20430 -16.53498 -16.43219 -15.93728 -15.57023 -14.96731 -14.71564 -14.69054 -14.14802 -13.82550 -13.73286 -13.41623 -13.22155 -12.98633 -12.91592 -12.78678 -12.57257 -12.35729 -12.15462 -11.69783 -11.46423 -11.18944 -10.53766 -10.49743 -10.26534 -9.75920 -9.58133 -8.71356 -8.23522 -6.06161 0.49349 0.74010 0.81072 1.26195 1.42744 1.44604 1.55303 1.87230 2.22518 2.65246 3.06541 3.25139 3.63370 3.78330 3.87503 4.03840 4.10244 4.16490 4.19645 4.30213 4.46191 4.52269 4.59483 4.65988 4.73454 4.81814 4.95538 5.00349 5.15113 5.35212 5.40392 5.42240 5.73995 6.05140 6.41767 7.03676 7.38259 7.54035 7.85927 8.70938 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.007451 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.416172 B = 3756.920615 C = 4911.385312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C -0.001 4.001 3 Si 0.987 3.013 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.363 4.363 8 H 0.121 0.879 9 N -0.413 5.413 10 C 0.478 3.522 11 O -0.622 6.622 12 C -0.088 4.088 13 H 0.112 0.888 14 C -0.110 4.110 15 C -0.054 4.054 16 S -0.311 6.311 17 C -0.040 4.040 18 C 0.400 3.600 19 C -0.198 4.198 20 C -0.074 4.074 21 C -0.191 4.191 22 C 0.091 3.909 23 N -0.484 5.484 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -3.155 3.756 6.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.205 4.205 3 Si 0.810 3.190 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.138 0.862 9 N -0.131 5.131 10 C 0.267 3.733 11 O -0.508 6.508 12 C -0.111 4.111 13 H 0.130 0.870 14 C -0.149 4.149 15 C -0.201 4.201 16 S -0.085 6.085 17 C -0.189 4.189 18 C 0.175 3.825 19 C -0.221 4.221 20 C -0.100 4.100 21 C -0.210 4.210 22 C -0.068 4.068 23 N -0.195 5.195 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.620 -3.259 1.874 5.956 hybrid contribution -0.798 0.951 1.586 2.015 sum 3.821 -2.307 3.460 5.648 Atomic orbital electron populations 1.70104 1.07129 1.27645 1.46096 1.26206 0.96223 1.02841 0.95270 0.85017 0.78572 0.76920 0.78479 1.20062 1.21344 1.17566 1.19969 0.93569 0.82218 1.53098 0.86201 1.41429 1.15772 1.07344 1.48510 1.20585 0.89569 0.82804 0.80363 1.90528 1.64438 1.34219 1.61656 1.22113 0.93730 1.00716 0.94523 0.86994 1.22126 0.95781 0.95372 1.01639 1.24060 1.00538 1.01997 0.93511 1.87315 1.25649 1.61064 1.34510 1.23897 0.95467 1.04441 0.95046 1.18079 0.85750 0.90540 0.88085 1.22024 1.00065 1.05731 0.94246 1.21672 0.91069 0.95859 1.01404 1.22278 1.00337 1.03796 0.94621 1.22837 0.94559 0.95738 0.93703 1.67116 0.99072 1.10135 1.43142 0.92527 0.91236 0.88530 0.86492 0.86608 0.87958 0.90884 0.85907 0.81850 0.81664 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.78 10.38 21.65 0.22 -46.56 16 2 C 0.00 -0.05 5.30 84.91 0.45 0.40 16 3 Si 0.99 39.22 29.56 68.60 2.03 41.25 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.36 -17.83 9.09 84.01 0.76 -17.07 16 8 H 0.12 5.34 5.92 -2.91 -0.02 5.32 16 9 N -0.41 -21.05 2.73 -464.38 -1.27 -22.32 16 10 C 0.48 22.95 6.70 87.66 0.59 23.54 16 11 O -0.62 -33.38 15.92 -2.99 -0.05 -33.42 16 12 C -0.09 -3.30 2.27 -10.52 -0.02 -3.32 16 13 H 0.11 4.01 6.20 -2.39 -0.01 3.99 16 14 C -0.11 -3.35 5.55 31.32 0.17 -3.18 16 15 C -0.05 -1.28 7.34 72.42 0.53 -0.75 16 16 S -0.31 -9.52 23.26 -56.49 -1.31 -10.83 16 17 C -0.04 -1.46 6.73 72.71 0.49 -0.97 16 18 C 0.40 20.47 3.43 132.90 0.46 20.93 16 19 C -0.20 -8.78 10.02 22.50 0.23 -8.55 16 20 C -0.07 -2.61 10.17 22.44 0.23 -2.39 16 21 C -0.19 -6.50 10.11 22.39 0.23 -6.28 16 22 C 0.09 3.78 11.18 84.66 0.95 4.72 16 23 N -0.48 -24.99 8.98 -192.96 -1.73 -26.72 16 24 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 25 H 0.07 2.38 7.42 -2.39 -0.02 2.36 16 26 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 31 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.16 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -67.83 300.77 4.05 -63.77 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.11 Total: 27.74 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.05 Total: 7.09 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -2.78 Total: -95.60 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.05 Total: -33.42 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.31 Total: -10.83 kcal Total: -67.83 4.05 -63.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.575 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds