Wall clock time and date at job start Tue Mar 31 2020 00:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47463 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.47051 * 30.00515 * 3 2 1 6 6 H 1.48507 * 109.46786 * 150.00148 * 3 2 1 7 7 C 1.40022 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78815 * 179.97438 * 9 7 2 11 11 C 1.38302 * 119.12936 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.66735 * 359.74392 * 11 10 9 13 13 C 1.39636 * 119.49658 * 0.52185 * 12 11 10 14 14 N 1.39267 * 119.57094 * 179.74369 * 13 12 11 15 15 C 1.34776 * 119.99838 * 185.39363 * 14 13 12 16 16 O 1.21282 * 119.99969 * 354.86278 * 15 14 13 17 17 C 1.50701 * 120.00468 * 174.86043 * 15 14 13 18 18 C 1.52997 * 109.47282 * 179.97438 * 17 15 14 19 19 C 1.55887 * 110.81821 * 175.00047 * 18 17 15 20 20 S 1.83093 * 82.48161 * 142.76292 * 19 18 17 21 21 C 1.56006 * 110.87145 * 288.61007 * 18 17 15 22 22 N 1.31927 * 120.85197 * 359.47022 * 13 12 11 23 23 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.43345 * 359.97438 * 10 9 7 25 25 H 1.07998 * 120.66391 * 180.02562 * 11 10 9 26 26 H 1.07999 * 120.25216 * 180.25067 * 12 11 10 27 27 H 0.96997 * 120.00585 * 5.39884 * 14 13 12 28 28 H 1.09008 * 109.46553 * 60.00139 * 17 15 14 29 29 H 1.08999 * 109.46795 * 300.00243 * 17 15 14 30 30 H 1.09001 * 110.39456 * 51.83320 * 18 17 15 31 31 H 1.08999 * 114.38277 * 29.34851 * 19 18 17 32 32 H 1.08999 * 114.37996 * 256.16912 * 19 18 17 33 33 H 1.08994 * 114.37620 * 103.88075 * 21 18 17 34 34 H 1.09003 * 114.41325 * 330.66962 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3033 -4.8415 -0.0022 12 6 -0.0828 -4.7933 0.0038 13 6 -0.7278 -3.5548 -0.0008 14 7 -2.1195 -3.5047 -0.0002 15 6 -2.7512 -2.3196 -0.1144 16 8 -2.1109 -1.2896 -0.1239 17 6 -4.2530 -2.2742 -0.2304 18 6 -4.7119 -0.8192 -0.3460 19 6 -6.2489 -0.7411 -0.5940 20 16 -6.1079 0.7212 0.4988 21 6 -4.5400 -0.0726 1.0129 22 7 -0.0357 -2.4317 -0.0004 23 1 -0.4850 0.8401 0.0004 24 1 3.0886 -3.6560 -0.0029 25 1 1.8216 -5.7890 -0.0026 26 1 -0.6590 -5.7068 0.0077 27 1 -2.6343 -4.3226 0.0824 28 1 -4.6996 -2.7263 0.6553 29 1 -4.5657 -2.8258 -1.1170 30 1 -4.1649 -0.3104 -1.1398 31 1 -6.8161 -1.5685 -0.1677 32 1 -6.5276 -0.5092 -1.6219 33 1 -3.6852 0.6026 1.0503 34 1 -4.6262 -0.7113 1.8920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899224026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:12 Heat of formation + Delta-G solvation = 39.895464 kcal Electronic energy + Delta-G solvation = -19312.227862 eV Core-core repulsion = 16337.833383 eV Total energy + Delta-G solvation = -2974.394479 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.42308 -37.75073 -35.74232 -34.05922 -33.01031 -30.35439 -29.60637 -27.89886 -26.91067 -25.49872 -22.30427 -21.30386 -20.24942 -19.22401 -17.77339 -16.41856 -16.31740 -16.03497 -15.47737 -14.70216 -14.48143 -14.37044 -13.67107 -13.38538 -13.10471 -13.04548 -12.85303 -12.51957 -12.13339 -11.90352 -11.73519 -11.32334 -11.15726 -11.03569 -10.96533 -10.66833 -10.48999 -9.95164 -9.68561 -9.42018 -9.03661 -8.94198 -7.98330 -7.73638 -7.22977 -6.98273 -6.16281 -4.41713 1.71743 2.14462 2.75607 3.05447 3.16665 3.18523 3.25338 3.71085 3.77497 4.04931 4.50960 4.53456 4.77741 4.90416 5.22779 5.31262 5.35416 5.54427 5.60729 5.72095 5.92655 6.02595 6.10608 6.20638 6.47174 6.66854 6.81873 6.83330 7.22006 7.53393 7.60803 7.79567 8.04951 8.18286 8.45236 8.72340 9.03296 9.24567 10.22425 10.45737 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.006328 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.461567 B = 4423.688319 C = 6082.098040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.371 3.629 14 N -0.668 5.668 15 C 0.467 3.533 16 O -0.406 6.406 17 C -0.136 4.136 18 C -0.093 4.093 19 C -0.063 4.063 20 S -0.342 6.342 21 C -0.037 4.037 22 N -0.473 5.473 23 H 0.271 0.729 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.398 0.602 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -3.189 -0.428 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.170 4.170 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.132 3.868 14 N -0.315 5.315 15 C 0.249 3.751 16 O -0.269 6.269 17 C -0.179 4.179 18 C -0.113 4.113 19 C -0.212 4.212 20 S -0.116 6.116 21 C -0.185 4.185 22 N -0.192 5.192 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.231 0.769 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.539 -0.224 -0.164 11.542 hybrid contribution 1.101 -1.701 -0.179 2.034 sum -10.438 -1.924 -0.343 10.620 Atomic orbital electron populations 1.70322 1.05717 1.27288 1.24050 1.26155 0.95152 1.00515 0.95201 0.86538 0.80607 0.81908 0.79046 1.19667 1.20296 1.18774 1.19579 0.94063 0.89381 1.42512 0.90011 1.18394 0.87235 0.91931 0.87893 1.21631 0.98557 0.93562 1.19083 1.20563 0.93225 0.96515 0.95801 1.20503 0.94804 0.95000 1.28085 1.18639 0.83430 0.90905 0.93818 1.43457 1.05078 1.09377 1.73617 1.20700 0.89191 0.85024 0.80214 1.91149 1.65391 1.30661 1.39726 1.21892 0.94751 0.97553 1.03694 1.23214 0.93342 0.96164 0.98620 1.24823 0.98330 0.96258 1.01758 1.88462 1.34061 1.33233 1.55856 1.24843 0.95176 0.99524 0.98979 1.68704 1.06950 1.23192 1.20306 0.91690 0.88611 0.88683 0.89165 0.76875 0.89542 0.89179 0.86969 0.87801 0.87415 0.86323 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.56 9.00 55.55 0.50 -17.06 16 2 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 3 Si 0.89 19.08 29.56 -169.99 -5.02 14.06 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.42 -11.55 9.14 -37.73 -0.34 -11.89 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 C 0.27 7.50 6.55 -84.99 -0.56 6.94 16 10 C -0.31 -7.62 9.83 -38.66 -0.38 -8.00 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -7.89 9.95 -38.89 -0.39 -8.28 16 13 C 0.37 8.77 7.43 -154.97 -1.15 7.62 16 14 N -0.67 -12.32 5.38 -11.40 -0.06 -12.38 16 15 C 0.47 8.46 7.62 -10.99 -0.08 8.38 16 16 O -0.41 -9.26 11.11 5.56 0.06 -9.20 16 17 C -0.14 -1.63 5.25 -27.88 -0.15 -1.77 16 18 C -0.09 -1.17 2.38 -87.47 -0.21 -1.38 16 19 C -0.06 -0.64 8.51 38.70 0.33 -0.31 16 20 S -0.34 -4.65 24.06 -107.50 -2.59 -7.24 16 21 C -0.04 -0.52 7.69 38.77 0.30 -0.22 16 22 N -0.47 -12.91 5.74 -10.25 -0.06 -12.97 16 23 H 0.27 6.81 8.29 -40.82 -0.34 6.48 16 24 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 25 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.40 5.54 8.70 -40.82 -0.36 5.18 16 28 H 0.09 0.85 8.09 -51.92 -0.42 0.43 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.65 7.87 -51.93 -0.41 1.24 16 31 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.10 1.28 8.07 -51.93 -0.42 0.87 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -31.80 301.74 -9.86 -41.65 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.11 Total: 7.30 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.13 Total: -8.71 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.38 Total: -42.41 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -2.59 Total: -7.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.80 -9.86 -41.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899224026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.547 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds