Wall clock time and date at job start Tue Mar 31 2020 00:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47463 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.47051 * 30.00515 * 3 2 1 6 6 H 1.48507 * 109.46786 * 150.00148 * 3 2 1 7 7 C 1.40022 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78815 * 179.97438 * 9 7 2 11 11 C 1.38302 * 119.12936 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.66735 * 359.74392 * 11 10 9 13 13 C 1.39636 * 119.49658 * 0.52185 * 12 11 10 14 14 N 1.39267 * 119.57094 * 179.74369 * 13 12 11 15 15 C 1.34776 * 119.99838 * 185.39363 * 14 13 12 16 16 O 1.21282 * 119.99969 * 354.86278 * 15 14 13 17 17 C 1.50701 * 120.00468 * 174.86043 * 15 14 13 18 18 C 1.52997 * 109.47282 * 179.97438 * 17 15 14 19 19 C 1.55887 * 110.81821 * 175.00047 * 18 17 15 20 20 S 1.83093 * 82.48161 * 142.76292 * 19 18 17 21 21 C 1.56006 * 110.87145 * 288.61007 * 18 17 15 22 22 N 1.31927 * 120.85197 * 359.47022 * 13 12 11 23 23 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.43345 * 359.97438 * 10 9 7 25 25 H 1.07998 * 120.66391 * 180.02562 * 11 10 9 26 26 H 1.07999 * 120.25216 * 180.25067 * 12 11 10 27 27 H 0.96997 * 120.00585 * 5.39884 * 14 13 12 28 28 H 1.09008 * 109.46553 * 60.00139 * 17 15 14 29 29 H 1.08999 * 109.46795 * 300.00243 * 17 15 14 30 30 H 1.09001 * 110.39456 * 51.83320 * 18 17 15 31 31 H 1.08999 * 114.38277 * 29.34851 * 19 18 17 32 32 H 1.08999 * 114.37996 * 256.16912 * 19 18 17 33 33 H 1.08994 * 114.37620 * 103.88075 * 21 18 17 34 34 H 1.09003 * 114.41325 * 330.66962 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3033 -4.8415 -0.0022 12 6 -0.0828 -4.7933 0.0038 13 6 -0.7278 -3.5548 -0.0008 14 7 -2.1195 -3.5047 -0.0002 15 6 -2.7512 -2.3196 -0.1144 16 8 -2.1109 -1.2896 -0.1239 17 6 -4.2530 -2.2742 -0.2304 18 6 -4.7119 -0.8192 -0.3460 19 6 -6.2489 -0.7411 -0.5940 20 16 -6.1079 0.7212 0.4988 21 6 -4.5400 -0.0726 1.0129 22 7 -0.0357 -2.4317 -0.0004 23 1 -0.4850 0.8401 0.0004 24 1 3.0886 -3.6560 -0.0029 25 1 1.8216 -5.7890 -0.0026 26 1 -0.6590 -5.7068 0.0077 27 1 -2.6343 -4.3226 0.0824 28 1 -4.6996 -2.7263 0.6553 29 1 -4.5657 -2.8258 -1.1170 30 1 -4.1649 -0.3104 -1.1398 31 1 -6.8161 -1.5685 -0.1677 32 1 -6.5276 -0.5092 -1.6219 33 1 -3.6852 0.6026 1.0503 34 1 -4.6262 -0.7113 1.8920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899224026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:11 Heat of formation + Delta-G solvation = 20.777966 kcal Electronic energy + Delta-G solvation = -19313.056859 eV Core-core repulsion = 16337.833383 eV Total energy + Delta-G solvation = -2975.223476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95426 -39.40571 -36.91958 -35.76909 -34.77233 -32.20713 -31.25576 -29.21830 -27.87604 -27.35144 -23.95746 -23.09937 -21.53483 -20.59012 -19.53710 -17.96518 -17.63426 -17.34737 -16.64031 -16.43968 -16.24418 -15.71072 -15.47093 -14.81280 -14.59048 -14.17190 -14.02779 -13.96826 -13.68656 -13.38642 -12.93546 -12.78723 -12.72381 -12.55390 -12.36277 -12.30496 -12.05343 -11.76684 -11.44255 -10.82300 -10.58034 -10.33442 -9.86359 -9.03885 -8.80001 -8.76035 -8.04014 -6.39935 0.73450 0.95366 1.17009 1.27720 1.39365 1.50163 1.52784 2.25375 2.25971 2.42407 3.01436 3.49652 3.53496 3.78702 4.06806 4.12138 4.34407 4.42140 4.52298 4.59239 4.69587 4.72416 4.80916 4.87929 4.95883 4.98042 5.11500 5.20170 5.32235 5.71015 5.90651 5.95592 6.18242 6.41210 6.79690 6.90604 7.11929 7.81805 8.38294 8.57421 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.006328 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.461567 B = 4423.688319 C = 6082.098040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.015 3.985 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.237 3.763 10 C -0.333 4.333 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.349 3.651 14 N -0.658 5.658 15 C 0.455 3.545 16 O -0.458 6.458 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.027 4.027 20 S -0.395 6.395 21 C -0.035 4.035 22 N -0.505 5.505 23 H 0.269 0.731 24 H 0.100 0.900 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.421 0.579 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 -5.276 -0.790 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.211 4.211 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.112 3.888 10 C -0.356 4.356 11 C -0.060 4.060 12 C -0.373 4.373 13 C 0.110 3.890 14 N -0.307 5.307 15 C 0.240 3.760 16 O -0.324 6.324 17 C -0.158 4.158 18 C -0.111 4.111 19 C -0.174 4.174 20 S -0.170 6.170 21 C -0.184 4.184 22 N -0.224 5.224 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.259 0.741 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.491 -2.367 -0.527 13.707 hybrid contribution 1.619 -1.245 -0.080 2.044 sum -11.872 -3.613 -0.607 12.424 Atomic orbital electron populations 1.70499 1.06954 1.27766 1.25052 1.26924 0.96050 1.03572 0.94553 0.85420 0.79242 0.77285 0.79064 1.19229 1.19910 1.18122 1.19859 0.94321 0.90555 1.45071 0.90002 1.18858 0.88198 0.93192 0.88579 1.21793 0.99078 0.94006 1.20750 1.21029 0.93788 0.97182 0.94039 1.21003 0.95077 0.95992 1.25204 1.19203 0.85689 0.90866 0.93216 1.43498 1.03230 1.10991 1.72993 1.21858 0.91714 0.84015 0.78440 1.91159 1.67205 1.32396 1.41682 1.21847 0.89502 0.97562 1.06882 1.23125 0.95189 0.96153 0.96655 1.25000 0.95939 0.94544 1.01940 1.88660 1.34081 1.36645 1.57575 1.24737 0.93767 0.99318 1.00532 1.68685 1.07052 1.25386 1.21326 0.91992 0.88144 0.84825 0.85036 0.74145 0.86092 0.85645 0.89875 0.84345 0.85603 0.89819 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -38.54 9.00 21.84 0.20 -38.35 16 2 C 0.01 0.80 5.50 85.29 0.47 1.27 16 3 Si 0.97 40.90 29.56 68.60 2.03 42.93 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.47 -26.63 9.14 23.47 0.21 -26.41 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.24 13.64 6.55 40.21 0.26 13.90 16 10 C -0.33 -16.87 9.83 22.87 0.22 -16.64 16 11 C -0.04 -1.56 10.15 22.40 0.23 -1.33 16 12 C -0.35 -14.43 9.95 22.72 0.23 -14.20 16 13 C 0.35 16.26 7.43 133.24 0.99 17.25 16 14 N -0.66 -22.93 5.38 -308.37 -1.66 -24.59 16 15 C 0.46 15.99 7.62 87.66 0.67 16.66 16 16 O -0.46 -21.50 11.11 -3.04 -0.03 -21.53 16 17 C -0.12 -2.36 5.25 29.85 0.16 -2.20 16 18 C -0.09 -2.13 2.38 -8.75 -0.02 -2.15 16 19 C -0.03 -0.45 8.51 72.98 0.62 0.18 16 20 S -0.40 -10.44 24.06 -56.49 -1.36 -11.80 16 21 C -0.04 -0.99 7.69 73.02 0.56 -0.43 16 22 N -0.50 -28.29 5.74 -186.36 -1.07 -29.36 16 23 H 0.27 14.35 8.29 -92.71 -0.77 13.58 16 24 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 25 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 26 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 27 H 0.42 10.14 8.70 -92.71 -0.81 9.33 16 28 H 0.12 1.73 8.09 -2.38 -0.02 1.71 16 29 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.47 7.87 -2.39 -0.02 2.45 16 31 H 0.14 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.11 2.78 8.07 -2.39 -0.02 2.76 16 Total: -1.00 -74.80 301.74 3.02 -71.78 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.32 Total: 25.03 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.60 Total: -14.11 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -2.53 Total: -92.30 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.03 Total: -21.53 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: -10.44 SS G_CDS: -1.36 Total: -11.80 kcal Total: -74.80 3.02 -71.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899224026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.554 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds