Wall clock time and date at job start Tue Mar 31 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47082 * 267.05558 * 3 2 1 5 5 C 1.37090 * 120.00022 * 264.97336 * 4 3 2 6 6 H 1.08004 * 120.00065 * 202.17419 * 5 4 3 7 7 C 1.38952 * 120.00201 * 22.17563 * 5 4 3 8 8 N 1.31414 * 119.99946 * 23.40513 * 7 5 4 9 9 Si 1.86801 * 119.99970 * 203.40371 * 7 5 4 10 10 H 1.48496 * 109.47254 * 59.99684 * 9 7 5 11 11 H 1.48499 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47015 * 299.99688 * 9 7 5 13 13 C 1.34781 * 119.99477 * 84.97390 * 4 3 2 14 14 O 1.21286 * 120.00008 * 355.11449 * 13 4 3 15 15 C 1.50697 * 119.99544 * 175.12253 * 13 4 3 16 16 C 1.53008 * 109.46879 * 296.70677 * 15 13 4 17 17 C 1.52995 * 109.47428 * 56.70594 * 15 13 4 18 18 C 1.50695 * 109.47103 * 176.71072 * 15 13 4 19 19 N 1.29029 * 124.91642 * 299.68912 * 18 15 13 20 20 C 1.31779 * 117.13001 * 179.81389 * 19 18 15 21 21 C 1.33646 * 114.49586 * 0.47419 * 20 19 18 22 22 S 1.70981 * 124.92024 * 119.99883 * 18 15 13 23 23 H 4.40646 * 5.51442 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.47474 * 147.05789 * 3 2 1 25 25 H 1.09000 * 109.47250 * 27.05667 * 3 2 1 26 26 H 0.97001 * 119.99904 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.46836 * 171.45523 * 16 15 13 28 28 H 1.09003 * 109.46912 * 51.45498 * 16 15 13 29 29 H 1.08997 * 109.47147 * 291.45422 * 16 15 13 30 30 H 1.09008 * 109.47385 * 304.36241 * 17 15 13 31 31 H 1.09003 * 109.47388 * 64.36260 * 17 15 13 32 32 H 1.08997 * 109.47372 * 184.36430 * 17 15 13 33 33 H 1.07996 * 122.75355 * 180.22763 * 20 19 18 34 34 H 1.08000 * 126.03897 * 179.71527 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0718 1.3795 5 6 3.4603 1.2845 1.9295 6 1 4.1347 1.3317 2.7718 7 6 2.9231 2.4530 1.4034 8 7 1.7981 2.4119 0.7254 9 14 3.7999 4.0823 1.6600 10 1 5.1586 4.0124 1.0649 11 1 3.0275 5.1686 1.0055 12 1 3.9104 4.3613 3.1144 13 6 3.2630 -1.0550 2.1077 14 8 2.8918 -2.1165 1.6532 15 6 3.8679 -0.9959 3.4866 16 6 5.3213 -0.5281 3.3863 17 6 3.0744 -0.0133 4.3501 18 6 3.8233 -2.3654 4.1139 19 7 2.7461 -3.0374 4.3443 20 6 2.8858 -4.2254 4.8973 21 6 4.1505 -4.5708 5.1564 22 16 5.1920 -3.2506 4.6301 23 1 -1.0500 0.0002 0.0000 24 1 3.0090 0.8632 -0.5588 25 1 3.0098 -0.9144 -0.4675 26 1 1.4233 3.2275 0.3578 27 1 5.7121 -0.3396 4.3862 28 1 5.3680 0.3890 2.7990 29 1 5.9190 -1.3004 2.9023 30 1 3.0414 0.9586 3.8576 31 1 2.0592 -0.3865 4.4857 32 1 3.5570 0.0881 5.3221 33 1 2.0467 -4.8656 5.1261 34 1 4.4766 -5.4956 5.6090 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907978652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:48 Heat of formation + Delta-G solvation = 92.873783 kcal Electronic energy + Delta-G solvation = -19898.938644 eV Core-core repulsion = 16926.841477 eV Total energy + Delta-G solvation = -2972.097167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82811 -38.56318 -35.14024 -34.69434 -31.86929 -31.21375 -29.31672 -26.90529 -26.36761 -25.17909 -24.72071 -21.85269 -20.09706 -18.83417 -18.14067 -17.20086 -16.59826 -15.70410 -15.18454 -14.54920 -14.38933 -14.08945 -13.82264 -13.56337 -13.18696 -13.00347 -12.53176 -12.10302 -11.92084 -11.90242 -11.53266 -11.39860 -11.25875 -11.09822 -10.98511 -10.57406 -10.51157 -9.80288 -9.24368 -9.23710 -9.15027 -8.94637 -8.69745 -8.57009 -8.25780 -7.85857 -6.39237 -3.99284 1.11801 1.73923 2.13000 3.07327 3.18132 3.18560 3.31301 3.73121 3.97800 4.12501 4.34447 4.52684 4.90476 4.96572 5.31803 5.39903 5.56899 5.63242 5.74954 5.84364 5.95178 6.12959 6.23138 6.44468 6.47861 6.52516 6.69745 6.71972 6.77612 7.14218 7.21241 7.35647 7.67680 8.23619 8.26572 8.99105 9.07602 9.40350 9.82624 10.57897 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.006742 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.850273 B = 4152.343217 C = 4929.326687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.101 4.101 3 C 0.247 3.753 4 N -0.436 5.436 5 C -0.364 4.364 6 H 0.118 0.882 7 C 0.043 3.957 8 N -0.837 5.837 9 Si 0.908 3.092 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.485 3.515 14 O -0.584 6.584 15 C 0.012 3.988 16 C -0.162 4.162 17 C -0.153 4.153 18 C 0.108 3.892 19 N -0.459 5.459 20 C 0.047 3.953 21 C -0.284 4.284 22 S 0.096 5.904 23 H 0.195 0.805 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.271 0.729 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.168 0.832 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.383 -4.327 5.886 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.103 4.103 3 C 0.124 3.876 4 N -0.155 5.155 5 C -0.490 4.490 6 H 0.135 0.865 7 C -0.166 4.166 8 N -0.471 5.471 9 Si 0.734 3.266 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.271 3.729 14 O -0.468 6.468 15 C 0.005 3.995 16 C -0.220 4.220 17 C -0.211 4.211 18 C -0.171 4.171 19 N -0.171 5.171 20 C -0.105 4.105 21 C -0.423 4.423 22 S 0.351 5.649 23 H 0.213 0.787 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.186 0.814 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.642 -4.321 5.409 9.593 hybrid contribution -0.801 0.243 0.396 0.926 sum 5.840 -4.078 5.805 9.188 Atomic orbital electron populations 1.24123 0.95269 1.07004 1.02166 1.23004 0.94268 0.94820 0.98221 1.17943 0.84485 1.00468 0.84685 1.43480 1.56587 1.05625 1.09771 1.19797 1.28288 0.82129 1.18760 0.86522 1.25318 0.94457 0.99517 0.97267 1.70141 1.14227 1.29269 1.33504 0.86306 0.79759 0.81618 0.78950 1.19676 1.20971 1.19644 1.19554 0.83204 0.84553 0.85591 1.90582 1.54053 1.30278 1.71856 1.19114 0.97885 0.87755 0.94739 1.22230 0.92663 1.04105 1.03004 1.22293 0.99144 1.02002 0.97672 1.26850 0.89993 1.00217 1.00038 1.66131 1.30668 1.06389 1.13877 1.21798 0.96495 0.93235 0.98982 1.26955 0.96802 1.04958 1.13593 1.83705 1.14448 1.10535 1.56164 0.78736 0.88675 0.91570 0.91855 0.91948 0.87664 0.92535 0.86221 0.92354 0.93596 0.81449 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.25 19.24 29.55 0.57 -5.68 16 2 C -0.10 -2.54 11.23 -37.13 -0.42 -2.95 16 3 C 0.25 5.89 5.05 -6.83 -0.03 5.86 16 4 N -0.44 -10.51 2.59 -117.93 -0.31 -10.82 16 5 C -0.36 -8.36 6.24 -14.94 -0.09 -8.45 16 6 H 0.12 2.45 3.54 -52.48 -0.19 2.26 16 7 C 0.04 0.99 4.77 -17.47 -0.08 0.91 16 8 N -0.84 -20.89 9.73 55.50 0.54 -20.35 16 9 Si 0.91 17.98 29.61 -169.99 -5.03 12.94 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.48 11.72 6.40 -10.98 -0.07 11.65 16 14 O -0.58 -15.92 15.47 5.55 0.09 -15.83 16 15 C 0.01 0.24 0.72 -156.81 -0.11 0.13 16 16 C -0.16 -2.70 7.33 37.16 0.27 -2.43 16 17 C -0.15 -2.99 8.06 37.15 0.30 -2.69 16 18 C 0.11 2.12 5.19 -13.46 -0.07 2.06 16 19 N -0.46 -9.49 10.13 -11.86 -0.12 -9.61 16 20 C 0.05 0.77 11.35 -19.18 -0.22 0.56 16 21 C -0.28 -4.06 11.37 29.12 0.33 -3.72 16 22 S 0.10 1.48 21.48 -107.50 -2.31 -0.83 16 23 H 0.20 3.80 7.80 -54.09 -0.42 3.38 16 24 H 0.10 2.22 6.90 -51.93 -0.36 1.86 16 25 H 0.07 1.52 7.65 -51.93 -0.40 1.13 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 28 H 0.10 1.81 5.16 -51.93 -0.27 1.54 16 29 H 0.06 0.90 7.50 -51.93 -0.39 0.51 16 30 H 0.12 2.48 4.36 -51.92 -0.23 2.25 16 31 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -30.22 299.00 -5.76 -35.98 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.49 Total: 8.79 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 0.37 Total: -4.78 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.11 Total: -40.78 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.31 Total: -0.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.22 -5.76 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907978652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.852 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds