Wall clock time and date at job start Tue Mar 31 2020 01:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47082 * 267.05558 * 3 2 1 5 5 C 1.37090 * 120.00022 * 264.97336 * 4 3 2 6 6 H 1.08004 * 120.00065 * 202.17419 * 5 4 3 7 7 C 1.38952 * 120.00201 * 22.17563 * 5 4 3 8 8 N 1.31414 * 119.99946 * 23.40513 * 7 5 4 9 9 Si 1.86801 * 119.99970 * 203.40371 * 7 5 4 10 10 H 1.48496 * 109.47254 * 59.99684 * 9 7 5 11 11 H 1.48499 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47015 * 299.99688 * 9 7 5 13 13 C 1.34781 * 119.99477 * 84.97390 * 4 3 2 14 14 O 1.21286 * 120.00008 * 355.11449 * 13 4 3 15 15 C 1.50697 * 119.99544 * 175.12253 * 13 4 3 16 16 C 1.53008 * 109.46879 * 296.70677 * 15 13 4 17 17 C 1.52995 * 109.47428 * 56.70594 * 15 13 4 18 18 C 1.50695 * 109.47103 * 176.71072 * 15 13 4 19 19 N 1.29029 * 124.91642 * 299.68912 * 18 15 13 20 20 C 1.31779 * 117.13001 * 179.81389 * 19 18 15 21 21 C 1.33646 * 114.49586 * 0.47419 * 20 19 18 22 22 S 1.70981 * 124.92024 * 119.99883 * 18 15 13 23 23 H 4.40646 * 5.51442 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.47474 * 147.05789 * 3 2 1 25 25 H 1.09000 * 109.47250 * 27.05667 * 3 2 1 26 26 H 0.97001 * 119.99904 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.46836 * 171.45523 * 16 15 13 28 28 H 1.09003 * 109.46912 * 51.45498 * 16 15 13 29 29 H 1.08997 * 109.47147 * 291.45422 * 16 15 13 30 30 H 1.09008 * 109.47385 * 304.36241 * 17 15 13 31 31 H 1.09003 * 109.47388 * 64.36260 * 17 15 13 32 32 H 1.08997 * 109.47372 * 184.36430 * 17 15 13 33 33 H 1.07996 * 122.75355 * 180.22763 * 20 19 18 34 34 H 1.08000 * 126.03897 * 179.71527 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0718 1.3795 5 6 3.4603 1.2845 1.9295 6 1 4.1347 1.3317 2.7718 7 6 2.9231 2.4530 1.4034 8 7 1.7981 2.4119 0.7254 9 14 3.7999 4.0823 1.6600 10 1 5.1586 4.0124 1.0649 11 1 3.0275 5.1686 1.0055 12 1 3.9104 4.3613 3.1144 13 6 3.2630 -1.0550 2.1077 14 8 2.8918 -2.1165 1.6532 15 6 3.8679 -0.9959 3.4866 16 6 5.3213 -0.5281 3.3863 17 6 3.0744 -0.0133 4.3501 18 6 3.8233 -2.3654 4.1139 19 7 2.7461 -3.0374 4.3443 20 6 2.8858 -4.2254 4.8973 21 6 4.1505 -4.5708 5.1564 22 16 5.1920 -3.2506 4.6301 23 1 -1.0500 0.0002 0.0000 24 1 3.0090 0.8632 -0.5588 25 1 3.0098 -0.9144 -0.4675 26 1 1.4233 3.2275 0.3578 27 1 5.7121 -0.3396 4.3862 28 1 5.3680 0.3890 2.7990 29 1 5.9190 -1.3004 2.9023 30 1 3.0414 0.9586 3.8576 31 1 2.0592 -0.3865 4.4857 32 1 3.5570 0.0881 5.3221 33 1 2.0467 -4.8656 5.1261 34 1 4.4766 -5.4956 5.6090 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907978652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:47 Heat of formation + Delta-G solvation = 74.293476 kcal Electronic energy + Delta-G solvation = -19899.744346 eV Core-core repulsion = 16926.841477 eV Total energy + Delta-G solvation = -2972.902869 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39821 -40.07213 -36.97090 -36.30409 -33.70945 -33.04005 -30.61229 -28.47363 -28.05517 -26.90210 -26.14478 -23.40668 -21.56140 -20.46520 -19.74576 -18.78259 -18.21704 -17.43113 -16.57585 -16.21404 -16.02442 -15.79299 -15.37245 -14.98894 -14.71922 -14.49158 -14.07875 -13.89072 -13.59284 -13.39148 -13.10653 -12.97356 -12.84544 -12.53452 -12.35633 -12.11438 -12.04763 -11.46958 -11.14636 -11.00825 -10.59690 -10.50487 -10.21967 -10.12814 -9.75122 -9.68178 -8.17873 -5.82866 -0.14579 0.51429 0.89130 1.49149 1.57327 1.64156 1.90526 2.01374 2.20732 2.37574 2.45921 3.11508 3.20636 3.24519 3.92476 3.94718 4.10908 4.25485 4.39479 4.44827 4.63446 4.71342 4.79155 4.84517 4.86315 4.98932 5.08180 5.25317 5.27566 5.38652 5.53708 5.63773 5.87170 6.42628 7.00539 7.16985 7.18510 7.58440 8.00789 8.79865 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.006742 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.850273 B = 4152.343217 C = 4929.326687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.141 4.141 3 C 0.246 3.754 4 N -0.442 5.442 5 C -0.370 4.370 6 H 0.139 0.861 7 C 0.001 3.999 8 N -0.872 5.872 9 Si 0.975 3.025 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.260 1.260 13 C 0.470 3.530 14 O -0.625 6.625 15 C 0.013 3.987 16 C -0.156 4.156 17 C -0.143 4.143 18 C 0.060 3.940 19 N -0.502 5.502 20 C 0.014 3.986 21 C -0.260 4.260 22 S 0.156 5.844 23 H 0.228 0.772 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.267 0.733 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.358 -4.524 7.735 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.142 4.142 3 C 0.123 3.877 4 N -0.160 5.160 5 C -0.495 4.495 6 H 0.156 0.844 7 C -0.204 4.204 8 N -0.507 5.507 9 Si 0.799 3.201 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.185 1.185 13 C 0.258 3.742 14 O -0.512 6.512 15 C 0.007 3.993 16 C -0.214 4.214 17 C -0.201 4.201 18 C -0.218 4.218 19 N -0.216 5.216 20 C -0.136 4.136 21 C -0.399 4.399 22 S 0.411 5.589 23 H 0.245 0.755 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.205 0.795 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.637 -4.502 7.268 12.153 hybrid contribution -1.444 0.177 -0.160 1.464 sum 7.193 -4.325 7.107 10.998 Atomic orbital electron populations 1.25001 0.96357 1.05812 1.00964 1.23515 0.95253 0.95994 0.99451 1.17919 0.84418 1.00119 0.85233 1.43737 1.56141 1.06310 1.09786 1.20304 1.28292 0.81733 1.19197 0.84447 1.26144 0.94719 1.02579 0.96951 1.70278 1.15722 1.29759 1.34936 0.85253 0.78553 0.77049 0.79211 1.18731 1.22122 1.18464 1.20396 0.82872 0.83814 0.87095 1.90529 1.55843 1.31654 1.73198 1.19066 0.99335 0.89058 0.91889 1.22210 0.90519 1.03716 1.04945 1.22160 0.97914 1.00853 0.99178 1.26727 0.91978 1.00764 1.02306 1.66092 1.32632 1.08188 1.14732 1.22154 0.98427 0.92823 1.00234 1.27514 0.95736 1.05708 1.10931 1.83341 1.11767 1.09407 1.54372 0.75512 0.88872 0.91821 0.92311 0.88647 0.88333 0.92035 0.87588 0.95385 0.90368 0.79537 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.51 19.24 74.32 1.43 -11.08 16 2 C -0.14 -7.25 11.23 31.12 0.35 -6.90 16 3 C 0.25 12.21 5.05 84.57 0.43 12.64 16 4 N -0.44 -21.80 2.59 -645.42 -1.67 -23.47 16 5 C -0.37 -17.00 6.24 84.04 0.52 -16.47 16 6 H 0.14 5.62 3.54 -2.91 -0.01 5.61 16 7 C 0.00 0.04 4.77 84.93 0.41 0.44 16 8 N -0.87 -44.28 9.73 21.66 0.21 -44.07 16 9 Si 0.98 36.42 29.61 68.60 2.03 38.45 16 10 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 11 H -0.30 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 13 C 0.47 23.22 6.40 87.66 0.56 23.78 16 14 O -0.63 -35.27 15.47 -3.05 -0.05 -35.32 16 15 C 0.01 0.53 0.72 -53.68 -0.04 0.49 16 16 C -0.16 -4.89 7.33 71.98 0.53 -4.36 16 17 C -0.14 -5.53 8.06 71.98 0.58 -4.95 16 18 C 0.06 2.30 5.19 88.52 0.46 2.76 16 19 N -0.50 -20.74 10.13 -191.45 -1.94 -22.68 16 20 C 0.01 0.45 11.35 83.66 0.95 1.39 16 21 C -0.26 -6.54 11.37 66.78 0.76 -5.78 16 22 S 0.16 4.33 21.48 -56.49 -1.21 3.12 16 23 H 0.23 8.75 7.80 -4.42 -0.03 8.71 16 24 H 0.09 4.54 6.90 -2.39 -0.02 4.52 16 25 H 0.06 3.09 7.65 -2.39 -0.02 3.08 16 26 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 27 H 0.09 2.32 8.12 -2.39 -0.02 2.30 16 28 H 0.10 3.20 5.16 -2.39 -0.01 3.19 16 29 H 0.06 1.84 7.50 -2.39 -0.02 1.82 16 30 H 0.11 4.36 4.36 -2.38 -0.01 4.35 16 31 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -67.66 299.00 5.43 -62.22 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.13 Total: 29.81 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 6.94 Total: -8.05 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.40 Total: -90.23 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.05 Total: -35.32 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.21 Total: 3.12 kcal Total: -67.66 5.43 -62.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907978652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.515 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds