Wall clock time and date at job start Tue Mar 31 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 C 1.50694 * 109.47246 * 239.99443 * 2 1 3 5 5 H 1.07998 * 120.00765 * 239.99980 * 4 2 1 6 6 C 1.37887 * 119.99917 * 60.00409 * 4 2 1 7 7 N 1.31514 * 119.99725 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00125 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46617 * 90.00219 * 8 6 4 10 10 H 1.48500 * 109.46894 * 209.99812 * 8 6 4 11 11 H 1.48497 * 109.47361 * 330.00038 * 8 6 4 12 12 C 1.53010 * 109.46877 * 119.99935 * 2 1 3 13 13 N 1.46502 * 109.47034 * 299.99686 * 12 2 1 14 14 C 1.34774 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21610 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.47366 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.38884 * 123.09438 * 359.97438 * 16 14 13 18 18 C 1.33325 * 115.20427 * 180.02562 * 17 16 14 19 19 S 1.75729 * 110.43954 * 359.97438 * 18 17 16 20 20 C 1.38001 * 123.09599 * 179.97438 * 16 14 13 21 21 C 1.43202 * 125.38083 * 359.97438 * 20 16 14 22 22 N 7.30477 * 102.56598 * 108.38771 * 2 1 3 23 23 H 1.09000 * 109.47480 * 300.00288 * 1 2 3 24 24 H 1.08996 * 109.47045 * 60.00094 * 1 2 3 25 25 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47008 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46990 * 299.99940 * 3 2 1 28 28 H 1.09000 * 109.47541 * 59.99745 * 3 2 1 29 29 H 0.96996 * 120.00231 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46709 * 179.97438 * 12 2 1 31 31 H 1.08994 * 109.47165 * 60.00113 * 12 2 1 32 32 H 0.96998 * 119.99584 * 0.02562 * 13 12 2 33 33 H 1.08000 * 122.39638 * 0.03737 * 17 16 14 34 34 H 1.07996 * 124.77890 * 180.26881 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5767 -1.4795 3.7813 16 6 1.3859 0.2037 4.8728 17 6 0.5843 1.3366 4.8201 18 6 0.2304 1.8372 6.0041 19 16 0.9117 0.8737 7.3062 20 6 1.6797 -0.2118 6.1556 21 6 2.4827 -1.3476 6.4958 22 7 3.1192 -2.2491 6.7658 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7088 1.1612 -3.4844 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 0.9937 0.7579 2.3564 33 1 0.2699 1.7801 3.8870 34 1 -0.3915 2.7091 6.1432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909882301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:23 Heat of formation + Delta-G solvation = 4.165304 kcal Electronic energy + Delta-G solvation = -18775.402727 eV Core-core repulsion = 15799.458872 eV Total energy + Delta-G solvation = -2975.943855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21902 -38.72199 -37.87067 -37.42212 -35.04448 -32.74530 -31.16972 -28.18947 -27.52452 -27.26129 -25.58293 -22.75801 -21.71393 -20.62125 -20.24987 -17.93004 -17.68024 -17.18022 -16.53414 -16.46539 -16.26750 -15.29780 -15.24492 -14.84149 -14.65285 -14.49657 -14.47618 -14.05284 -13.96997 -13.44523 -13.16552 -13.09730 -13.00751 -12.67665 -12.59948 -12.22668 -12.12846 -12.08232 -11.46528 -11.33406 -11.01946 -10.68550 -10.38641 -10.11489 -9.88944 -9.57453 -8.01578 -6.16434 -0.91350 0.04947 0.75757 0.96942 1.42509 1.46022 1.53694 1.69254 1.86893 2.25453 2.41249 2.49082 2.93640 3.22272 3.69668 4.07188 4.24023 4.46243 4.50606 4.73686 4.82039 5.00258 5.03428 5.08801 5.10427 5.16093 5.22594 5.34186 5.56393 5.69306 5.70817 6.19302 6.23478 6.33034 6.45475 6.57969 6.86848 7.19587 7.50982 8.97158 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.003981 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.072967 B = 7031.989122 C = 7700.007155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.895 5.895 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.147 3.853 13 N -0.692 5.692 14 C 0.551 3.449 15 O -0.586 6.586 16 C -0.087 4.087 17 C -0.133 4.133 18 C -0.164 4.164 19 S 0.294 5.706 20 C -0.138 4.138 21 C 0.294 3.706 22 N -0.441 5.441 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.261 0.739 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 9.491 17.860 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.344 5.344 14 C 0.337 3.663 15 O -0.468 6.468 16 C -0.111 4.111 17 C -0.160 4.160 18 C -0.301 4.301 19 S 0.561 5.439 20 C -0.260 4.260 21 C -0.021 4.021 22 N -0.120 5.120 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.252 0.748 33 H 0.193 0.807 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.421 7.661 19.795 21.908 hybrid contribution 0.313 -0.457 -3.060 3.110 sum -5.108 7.204 16.736 18.923 Atomic orbital electron populations 1.21679 0.96732 0.98731 1.00764 1.18371 0.93539 0.93185 0.89852 1.21677 0.97894 0.97566 1.00760 1.21257 1.31778 1.12141 0.91718 0.94132 1.25376 0.95154 0.95567 1.00694 1.69881 1.36842 1.23068 1.23603 0.85828 0.78560 0.78585 0.80221 1.20575 1.20662 1.20434 1.21340 0.97102 0.95179 0.84073 1.45922 1.52037 1.31757 1.04652 1.18314 0.80162 0.83734 0.84051 1.90802 1.40323 1.28313 1.87351 1.19468 1.02165 0.98768 0.90670 1.20154 0.99267 0.94702 1.01857 1.26453 1.04562 1.05250 0.93859 1.84075 1.40166 1.14844 1.04854 1.20729 1.07610 0.99232 0.98425 1.24533 0.92744 0.92259 0.92564 1.81170 1.10225 1.10877 1.09742 0.93797 0.91735 0.96502 0.96491 0.91734 0.93803 0.92971 0.94342 0.94325 0.74765 0.80725 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 4 C -0.53 -27.77 8.01 25.60 0.21 -27.57 16 5 H 0.04 2.20 7.74 -2.91 -0.02 2.18 16 6 C 0.03 1.67 5.15 84.66 0.44 2.11 16 7 N -0.90 -46.44 9.35 21.45 0.20 -46.24 16 8 Si 0.94 42.33 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.15 6.17 4.50 86.38 0.39 6.56 16 13 N -0.69 -22.88 4.93 -466.42 -2.30 -25.18 16 14 C 0.55 18.92 7.79 86.65 0.67 19.59 16 15 O -0.59 -25.89 15.19 -4.06 -0.06 -25.95 16 16 C -0.09 -2.10 5.86 -20.78 -0.12 -2.22 16 17 C -0.13 -1.85 9.61 21.31 0.20 -1.64 16 18 C -0.16 -1.17 11.16 66.71 0.74 -0.43 16 19 S 0.29 3.17 23.27 -56.49 -1.31 1.86 16 20 C -0.14 -3.20 6.36 23.46 0.15 -3.05 16 21 C 0.29 9.27 13.95 88.33 1.23 10.51 16 22 N -0.44 -16.18 18.54 19.01 0.35 -15.83 16 23 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 24 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 28 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 29 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.41 10.95 4.58 -92.71 -0.42 10.52 16 33 H 0.18 1.79 6.88 -2.91 -0.02 1.77 16 34 H 0.23 -0.35 8.06 -2.91 -0.02 -0.37 16 Total: -1.00 -69.78 305.18 4.67 -65.11 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 0.72 Total: 4.80 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.05 Total: -2.93 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.75 Total: -87.24 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.31 Total: 1.86 kcal Total: -69.78 4.67 -65.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909882301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.275 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds