Wall clock time and date at job start Tue Mar 31 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47079 * 269.99897 * 3 2 1 5 5 H 1.48500 * 109.47315 * 30.00258 * 3 2 1 6 6 H 1.48505 * 109.47069 * 149.99997 * 3 2 1 7 7 C 1.37879 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00433 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47486 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47383 * 179.97438 * 11 10 9 13 13 C 1.34744 * 116.99825 * 179.97438 * 12 11 10 14 14 O 1.21500 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.47480 * 119.99630 * 180.02562 * 13 12 11 16 16 C 1.39758 * 120.08828 * 0.02562 * 15 13 12 17 17 C 1.37743 * 119.99846 * 179.73220 * 16 15 13 18 18 C 1.38877 * 120.22436 * 0.48304 * 17 16 15 19 19 C 1.39561 * 120.06456 * 359.51869 * 18 17 16 20 20 C 1.38106 * 119.98358 * 0.24201 * 19 18 17 21 21 O 1.36539 * 108.59427 * 180.23549 * 19 18 17 22 22 C 1.43983 * 105.44472 * 342.69315 * 21 19 18 23 23 O 1.36355 * 131.34831 * 179.82777 * 18 17 16 24 24 H 0.96995 * 119.99374 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47601 * 59.99916 * 9 7 2 26 26 H 1.08998 * 109.46693 * 299.99396 * 9 7 2 27 27 H 1.08998 * 109.47492 * 59.99081 * 10 9 7 28 28 H 1.09003 * 109.46744 * 299.99770 * 10 9 7 29 29 H 1.09006 * 109.47178 * 59.99473 * 11 10 9 30 30 H 1.09003 * 109.47110 * 299.99754 * 11 10 9 31 31 H 1.07998 * 120.00314 * 359.97438 * 16 15 13 32 32 H 1.08003 * 119.88880 * 180.28337 * 17 16 15 33 33 H 1.08005 * 120.04779 * 180.02562 * 20 19 18 34 34 H 1.08995 * 110.55801 * 268.61078 * 22 21 19 35 35 H 1.09000 * 110.55852 * 145.75940 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0025 12 8 2.4236 -6.0909 0.0031 13 6 1.9085 -7.3359 0.0042 14 8 0.7039 -7.4951 0.0042 15 6 2.8068 -8.5056 0.0055 16 6 4.1926 -8.3246 0.0060 17 6 5.0299 -9.4183 0.0128 18 6 4.5021 -10.7029 0.0089 19 6 3.1192 -10.8905 0.0084 20 6 2.2744 -9.7980 0.0066 21 8 2.8618 -12.2314 0.0097 22 6 4.0910 -12.8582 -0.4018 23 8 5.1066 -11.9251 0.0108 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.8712 -3.6041 0.8921 28 1 2.8724 -3.6049 -0.8878 29 1 0.8537 -5.0455 -0.8877 30 1 0.8531 -5.0442 0.8923 31 1 4.6070 -7.3273 0.0051 32 1 6.1006 -9.2764 0.0178 33 1 1.2040 -9.9420 0.0065 34 1 4.1095 -12.9909 -1.4835 35 1 4.2212 -13.8146 0.1046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912957725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:13 Heat of formation + Delta-G solvation = -151.050065 kcal Electronic energy + Delta-G solvation = -20085.562226 eV Core-core repulsion = 16627.842105 eV Total energy + Delta-G solvation = -3457.720121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.30291 -41.54798 -38.86136 -37.73596 -37.42902 -35.91816 -33.69182 -32.00420 -31.50668 -29.00938 -27.07063 -25.75878 -24.66705 -24.03490 -22.29130 -22.12855 -19.71128 -19.04410 -18.70889 -18.44506 -17.81266 -17.68107 -17.56589 -16.56723 -16.47666 -15.67701 -15.59523 -15.24653 -15.02843 -14.69016 -14.19654 -14.11754 -14.06789 -13.92737 -13.74606 -13.66820 -12.81833 -12.50600 -12.46826 -12.28066 -12.07816 -11.99430 -11.88861 -11.45531 -11.39350 -11.22406 -10.55397 -10.13662 -9.31605 -8.20029 -6.31278 -0.62927 0.03504 1.22980 1.37442 1.43791 1.44663 1.55980 1.78883 2.40763 2.43848 2.46524 3.14156 3.22201 3.47306 3.74043 3.87613 3.96705 4.02885 4.03205 4.08455 4.20208 4.39355 4.43319 4.69963 4.79605 4.83275 4.89255 5.01448 5.09315 5.11504 5.18624 5.36331 5.52472 5.66867 5.82673 5.91842 6.20986 6.58824 6.85157 7.38260 8.92239 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.050684 B = 0.002573 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.306956 B =10879.054585 C =11392.814893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.345 6.345 13 C 0.510 3.490 14 O -0.539 6.539 15 C -0.131 4.131 16 C -0.034 4.034 17 C -0.106 4.106 18 C 0.069 3.931 19 C 0.007 3.993 20 C -0.047 4.047 21 O -0.322 6.322 22 C 0.203 3.797 23 O -0.311 6.311 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.696 -25.574 -1.207 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.130 4.130 11 C 0.005 3.995 12 O -0.261 6.261 13 C 0.357 3.643 14 O -0.431 6.431 15 C -0.132 4.132 16 C -0.052 4.052 17 C -0.124 4.124 18 C 0.024 3.976 19 C -0.037 4.037 20 C -0.066 4.066 21 O -0.239 6.239 22 C 0.093 3.907 23 O -0.227 6.227 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.191 0.809 32 H 0.195 0.805 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.226 -25.692 -1.101 28.473 hybrid contribution -0.594 0.723 -0.040 0.937 sum 11.632 -24.968 -1.141 27.568 Atomic orbital electron populations 1.70105 1.07914 1.27880 1.51600 1.26021 0.95778 1.03563 0.94699 0.85389 0.78671 0.78139 0.78499 1.19755 1.21002 1.18434 1.21635 0.93815 0.91796 1.50627 0.91480 1.18947 0.94338 0.92545 0.95456 1.21459 0.98709 0.89979 1.02883 1.23214 0.90954 0.83317 1.02052 1.86499 1.41493 1.14639 1.83442 1.21274 0.86963 0.83944 0.72142 1.90834 1.17591 1.87196 1.47437 1.18624 0.93721 0.89223 1.11634 1.21538 0.90239 1.00886 0.92522 1.20381 1.02826 0.86152 1.03057 1.20419 0.89658 0.88447 0.99123 1.19486 0.92978 0.84886 1.06379 1.19930 1.00565 0.87876 0.98210 1.87396 1.36825 1.14281 1.85349 1.26266 0.69125 0.92970 1.02380 1.87344 1.36860 1.14303 1.84161 0.92743 0.98515 0.98542 0.91157 0.91092 0.91729 0.91778 0.80910 0.80535 0.84050 0.87249 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 11 C 0.08 2.83 5.48 71.98 0.39 3.22 16 12 O -0.34 -10.85 9.46 -56.54 -0.53 -11.39 16 13 C 0.51 15.71 7.89 70.26 0.55 16.27 16 14 O -0.54 -19.88 16.13 19.84 0.32 -19.56 16 15 C -0.13 -3.11 5.87 -20.10 -0.12 -3.23 16 16 C -0.03 -0.59 9.60 22.52 0.22 -0.38 16 17 C -0.11 -1.55 10.04 22.31 0.22 -1.32 16 18 C 0.07 1.22 7.16 22.74 0.16 1.38 16 19 C 0.01 0.14 7.14 22.56 0.16 0.30 16 20 C -0.05 -1.09 9.60 22.61 0.22 -0.87 16 21 O -0.32 -5.94 11.41 -76.52 -0.87 -6.82 16 22 C 0.20 2.05 8.88 113.37 1.01 3.05 16 23 O -0.31 -4.77 11.39 -74.35 -0.85 -5.62 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.17 2.52 7.60 -2.91 -0.02 2.50 16 32 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.14 3.42 7.64 -2.91 -0.02 3.40 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.42 313.75 5.31 -65.10 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.10 Total: 2.42 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.83 Total: -13.34 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.93 Total: -43.38 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.42 5.31 -65.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912957725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.946 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds