Wall clock time and date at job start Mon Mar 30 2020 23:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.45199 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00070 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00094 * 179.97438 * 12 11 10 15 15 H 1.09006 * 110.96352 * 339.12924 * 14 12 11 16 16 C 1.54136 * 111.09790 * 214.99577 * 14 12 11 17 17 C 1.50881 * 110.50163 * 213.72475 * 16 14 12 18 18 C 1.39600 * 126.83507 * 200.59396 * 17 16 14 19 19 C 1.37696 * 121.05370 * 180.31660 * 18 17 16 20 20 C 1.38322 * 120.54528 * 0.03977 * 19 18 17 21 21 C 1.38027 * 119.29098 * 359.82605 * 20 19 18 22 22 C 1.38821 * 120.16118 * 359.97438 * 21 20 19 23 23 S 1.77437 * 130.56551 * 180.65621 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08995 * 109.28425 * 334.00715 * 16 14 12 30 30 H 1.09006 * 109.27933 * 93.53473 * 16 14 12 31 31 H 1.07989 * 119.47125 * 0.35103 * 18 17 16 32 32 H 1.07998 * 119.72825 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.35880 * 179.80401 * 20 19 18 34 34 H 1.08003 * 119.91953 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 8 1.5190 -4.9196 -0.0167 12 6 2.2501 -6.0453 -0.0212 13 8 3.4567 -5.9822 -0.0204 14 6 1.5659 -7.3881 -0.0273 15 1 0.5412 -7.3053 0.3353 16 6 2.3632 -8.4208 0.7934 17 6 2.2313 -9.7951 0.1848 18 6 2.4530 -11.0173 0.8218 19 6 2.3028 -12.2078 0.1464 20 6 1.9278 -12.2183 -1.1850 21 6 1.7011 -11.0204 -1.8321 22 6 1.8485 -9.8203 -1.1500 23 16 1.6169 -8.1475 -1.6946 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 3.4146 -8.1337 0.8093 30 1 1.9807 -8.4423 1.8139 31 1 2.7465 -11.0293 1.8609 32 1 2.4795 -13.1411 0.6603 33 1 1.8139 -13.1537 -1.7127 34 1 1.4082 -11.0167 -2.8717 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913251490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:25 Heat of formation + Delta-G solvation = -67.946981 kcal Electronic energy + Delta-G solvation = -17964.093217 eV Core-core repulsion = 14952.729588 eV Total energy + Delta-G solvation = -3011.363629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27729 -39.50551 -36.45607 -34.70587 -33.39001 -31.18382 -30.70092 -29.84822 -25.89341 -24.61946 -23.34088 -21.81580 -21.05522 -20.46274 -18.20090 -17.66561 -16.42343 -16.34259 -16.07954 -15.73697 -15.60873 -14.94230 -14.56994 -14.00577 -13.79552 -13.29286 -13.26359 -13.05725 -12.72017 -12.39085 -12.28851 -11.73100 -11.39502 -11.27835 -11.09941 -10.82270 -10.78932 -10.53975 -10.37692 -9.96469 -9.73501 -9.68936 -9.32379 -9.10490 -8.47552 -7.67527 -6.13199 -4.17805 0.76178 0.95038 1.01601 1.86300 2.61143 2.86565 3.26123 3.33098 3.33855 3.38533 4.03110 4.30553 4.38209 4.56840 4.68255 4.73973 4.99431 5.01922 5.16377 5.23599 5.24148 5.38118 5.54495 5.68816 5.93536 5.98035 6.00794 6.01808 6.14516 6.54028 6.56281 6.80542 7.50562 7.57556 7.81289 8.01750 8.19794 8.87828 9.46868 10.98343 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.055980 B = 0.002922 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.055316 B = 9580.363017 C = 9747.152338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.347 6.347 12 C 0.478 3.522 13 O -0.496 6.496 14 C -0.065 4.065 15 H 0.138 0.862 16 C -0.082 4.082 17 C -0.098 4.098 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.104 4.104 21 C -0.085 4.085 22 C -0.086 4.086 23 S -0.081 6.081 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -24.417 0.445 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.263 6.263 12 C 0.317 3.683 13 O -0.384 6.384 14 C -0.194 4.194 15 H 0.156 0.844 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.124 4.124 21 C -0.109 4.109 22 C -0.199 4.199 23 S 0.162 5.838 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.278 -23.547 -0.733 23.668 hybrid contribution 0.593 0.408 1.150 1.357 sum 2.871 -23.139 0.417 23.320 Atomic orbital electron populations 1.69985 1.06106 1.26945 1.49732 1.24989 0.94927 0.99435 0.94813 0.86406 0.80047 0.83081 0.77733 1.19571 1.20787 1.20804 1.21001 0.93222 0.90006 1.52251 0.92152 1.19193 0.94184 0.88913 0.99016 1.23772 0.96516 0.78205 1.01255 1.86527 1.42160 1.15574 1.82061 1.22189 0.86145 0.86222 0.73719 1.90649 1.15127 1.87746 1.44888 1.23613 1.05099 0.93237 0.97458 0.84433 1.20920 1.03047 0.88195 0.99762 1.20750 1.01115 0.94888 0.93653 1.20803 0.99729 0.90625 1.00030 1.20976 1.00370 0.97772 0.94868 1.21109 0.99066 0.97414 0.94831 1.20426 1.00593 0.89845 1.00030 1.22199 1.04329 0.96800 0.96530 1.86482 1.91205 0.98205 1.07861 0.92711 0.95252 0.95225 0.91988 0.91966 0.86893 0.88142 0.85675 0.85460 0.85032 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.65 5.40 37.16 0.20 1.85 16 11 O -0.35 -6.92 10.22 -39.26 -0.40 -7.32 16 12 C 0.48 8.33 7.14 36.01 0.26 8.59 16 13 O -0.50 -9.63 15.65 -18.75 -0.29 -9.92 16 14 C -0.06 -0.87 3.93 -27.29 -0.11 -0.97 16 15 H 0.14 1.59 8.14 -51.93 -0.42 1.16 16 16 C -0.08 -0.92 5.83 -27.20 -0.16 -1.08 16 17 C -0.10 -1.08 5.98 -103.79 -0.62 -1.70 16 18 C -0.09 -0.81 9.97 -39.27 -0.39 -1.20 16 19 C -0.12 -0.91 10.00 -39.75 -0.40 -1.31 16 20 C -0.10 -0.81 10.08 -39.63 -0.40 -1.21 16 21 C -0.09 -0.82 10.05 -39.44 -0.40 -1.22 16 22 C -0.09 -1.02 6.48 -39.13 -0.25 -1.27 16 23 S -0.08 -1.11 22.54 -107.50 -2.42 -3.54 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 28 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 29 H 0.11 1.41 6.99 -51.93 -0.36 1.05 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -31.47 311.46 -9.67 -41.14 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.13 Total: -3.32 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.83 Total: -12.50 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.69 Total: -17.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.42 Total: -3.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.47 -9.67 -41.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913251490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.807 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds