Wall clock time and date at job start Mon Mar 30 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.45199 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00070 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00094 * 179.97438 * 12 11 10 15 15 H 1.09006 * 110.96352 * 339.12924 * 14 12 11 16 16 C 1.54136 * 111.09790 * 214.99577 * 14 12 11 17 17 C 1.50881 * 110.50163 * 213.72475 * 16 14 12 18 18 C 1.39600 * 126.83507 * 200.59396 * 17 16 14 19 19 C 1.37696 * 121.05370 * 180.31660 * 18 17 16 20 20 C 1.38322 * 120.54528 * 0.03977 * 19 18 17 21 21 C 1.38027 * 119.29098 * 359.82605 * 20 19 18 22 22 C 1.38821 * 120.16118 * 359.97438 * 21 20 19 23 23 S 1.77437 * 130.56551 * 180.65621 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08995 * 109.28425 * 334.00715 * 16 14 12 30 30 H 1.09006 * 109.27933 * 93.53473 * 16 14 12 31 31 H 1.07989 * 119.47125 * 0.35103 * 18 17 16 32 32 H 1.07998 * 119.72825 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.35880 * 179.80401 * 20 19 18 34 34 H 1.08003 * 119.91953 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 8 1.5190 -4.9196 -0.0167 12 6 2.2501 -6.0453 -0.0212 13 8 3.4567 -5.9822 -0.0204 14 6 1.5659 -7.3881 -0.0273 15 1 0.5412 -7.3053 0.3353 16 6 2.3632 -8.4208 0.7934 17 6 2.2313 -9.7951 0.1848 18 6 2.4530 -11.0173 0.8218 19 6 2.3028 -12.2078 0.1464 20 6 1.9278 -12.2183 -1.1850 21 6 1.7011 -11.0204 -1.8321 22 6 1.8485 -9.8203 -1.1500 23 16 1.6169 -8.1475 -1.6946 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 3.4146 -8.1337 0.8093 30 1 1.9807 -8.4423 1.8139 31 1 2.7465 -11.0293 1.8609 32 1 2.4795 -13.1411 0.6603 33 1 1.8139 -13.1537 -1.7127 34 1 1.4082 -11.0167 -2.8717 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913251490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:24 Heat of formation + Delta-G solvation = -84.104828 kcal Electronic energy + Delta-G solvation = -17964.793874 eV Core-core repulsion = 14952.729588 eV Total energy + Delta-G solvation = -3012.064286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.72449 -40.28984 -38.00959 -35.65312 -35.47999 -32.49625 -31.85993 -30.99776 -27.43994 -26.07891 -24.14597 -23.14700 -22.50808 -21.73165 -19.43249 -18.85606 -18.32432 -17.76126 -17.49760 -16.62758 -16.52588 -16.47148 -15.93045 -15.06043 -15.04103 -14.48788 -14.40613 -14.22582 -14.05529 -13.80862 -13.24458 -13.17330 -13.06030 -12.67603 -12.61616 -12.42585 -12.09415 -12.06071 -11.65507 -11.57457 -11.43174 -11.34377 -10.76288 -10.64066 -9.79782 -8.65495 -8.29219 -6.42626 -0.24480 0.15751 0.32203 0.91575 1.26770 1.39810 1.41006 1.48513 1.56286 2.37902 2.65498 3.05470 3.08053 3.34923 3.64454 3.79925 3.90339 4.16047 4.16437 4.18500 4.38720 4.44104 4.53025 4.56087 4.63242 4.79145 4.99897 5.14430 5.24932 5.37887 5.42093 5.42534 5.50702 5.69789 5.92164 6.02951 6.48012 6.71129 7.27384 8.83718 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.055980 B = 0.002922 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.055316 B = 9580.363017 C = 9747.152338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.357 6.357 12 C 0.479 3.521 13 O -0.517 6.517 14 C -0.055 4.055 15 H 0.156 0.844 16 C -0.076 4.076 17 C -0.114 4.114 18 C -0.095 4.095 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.097 4.097 22 C -0.104 4.104 23 S -0.132 6.132 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.005 0.995 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -26.370 1.231 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.084 0.916 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.273 6.273 12 C 0.320 3.680 13 O -0.406 6.406 14 C -0.184 4.184 15 H 0.174 0.826 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.216 4.216 23 S 0.111 5.889 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.099 -25.538 0.055 25.725 hybrid contribution 0.325 0.824 0.888 1.254 sum 3.423 -24.714 0.944 24.968 Atomic orbital electron populations 1.70103 1.07842 1.28280 1.50372 1.25976 0.95848 1.03461 0.94031 0.85258 0.78893 0.77997 0.78048 1.18588 1.20108 1.19934 1.21389 0.93730 0.91105 1.52515 0.91595 1.18998 0.94349 0.90527 0.96826 1.23296 0.95178 0.78411 1.01428 1.86508 1.42412 1.15711 1.82653 1.22894 0.86045 0.86618 0.72434 1.90631 1.16141 1.88039 1.45779 1.23639 1.05925 0.91069 0.97777 0.82650 1.20905 1.01779 0.87930 1.00757 1.20819 1.02253 0.95340 0.93491 1.21142 0.99054 0.90053 1.01232 1.21441 0.98390 0.98636 0.94819 1.21527 0.97457 0.97718 0.95132 1.20721 1.00710 0.89900 1.00679 1.22230 1.06671 0.95520 0.97167 1.86546 1.91987 1.01409 1.08979 0.92283 0.97185 0.97644 0.92135 0.91350 0.88432 0.85538 0.83417 0.82146 0.81889 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.01 0.33 5.46 84.66 0.46 0.80 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.63 5.35 29.85 0.16 1.79 16 10 C 0.09 4.07 5.40 71.98 0.39 4.46 16 11 O -0.36 -14.58 10.22 -51.41 -0.53 -15.11 16 12 C 0.48 17.01 7.14 71.24 0.51 17.52 16 13 O -0.52 -20.43 15.65 21.97 0.34 -20.09 16 14 C -0.06 -1.48 3.93 30.23 0.12 -1.36 16 15 H 0.16 3.54 8.14 -2.38 -0.02 3.52 16 16 C -0.08 -1.66 5.83 30.29 0.18 -1.48 16 17 C -0.11 -2.33 5.98 -19.32 -0.12 -2.45 16 18 C -0.10 -1.39 9.97 22.47 0.22 -1.17 16 19 C -0.11 -1.27 10.00 22.16 0.22 -1.05 16 20 C -0.10 -1.20 10.08 22.24 0.22 -0.97 16 21 C -0.10 -1.72 10.05 22.36 0.22 -1.49 16 22 C -0.10 -2.38 6.48 22.56 0.15 -2.23 16 23 S -0.13 -3.71 22.54 -56.49 -1.27 -4.99 16 24 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.06 2.74 8.13 -2.38 -0.02 2.72 16 28 H 0.07 2.99 8.13 -2.39 -0.02 2.97 16 29 H 0.10 2.43 6.99 -2.39 -0.02 2.41 16 30 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.15 1.43 8.06 -2.92 -0.02 1.41 16 32 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -69.17 311.46 4.93 -64.24 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.10 Total: 4.27 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 2.97 Total: -18.68 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.18 Total: -35.20 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.27 Total: -4.99 kcal Total: -69.17 4.93 -64.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913251490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.863 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds