Wall clock time and date at job start Tue Mar 31 2020 00:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86802 * 120.00195 * 2 1 4 4 H 1.48495 * 109.47280 * 85.51306 * 3 2 1 5 5 H 1.48494 * 109.47218 * 325.50910 * 3 2 1 6 6 H 1.48506 * 109.46839 * 205.51543 * 3 2 1 7 7 C 1.39913 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99988 * 161.74802 * 7 2 1 9 9 C 1.41222 * 119.99858 * 341.75244 * 7 2 1 10 10 C 1.40824 * 120.18043 * 335.89671 * 9 7 2 11 11 C 1.36452 * 119.80463 * 179.69329 * 10 9 7 12 12 C 1.39280 * 120.18878 * 0.58037 * 11 10 9 13 13 O 1.35734 * 119.81474 * 179.69063 * 12 11 10 14 14 C 1.34600 * 117.00276 * 282.08250 * 13 12 11 15 15 O 1.21437 * 119.99857 * 4.55909 * 14 13 12 16 16 O 1.34543 * 120.00305 * 184.56545 * 14 13 12 17 17 C 1.45199 * 117.00112 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.43732 * 328.90504 * 17 16 14 19 19 C 1.54817 * 110.48410 * 206.22201 * 17 16 14 20 20 C 1.54999 * 102.08642 * 220.44265 * 19 17 16 21 21 O 1.44378 * 103.49531 * 37.02413 * 20 19 17 22 22 C 1.43744 * 106.97497 * 319.93865 * 21 20 19 23 23 C 1.39282 * 120.36900 * 359.71553 * 12 11 10 24 24 C 1.36444 * 120.18848 * 359.97438 * 23 12 11 25 25 H 0.96998 * 119.99239 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.09584 * 359.97311 * 10 9 7 27 27 H 1.08005 * 119.90213 * 180.29061 * 11 10 9 28 28 H 1.08998 * 110.90953 * 338.63707 * 19 17 16 29 29 H 1.09000 * 110.90821 * 102.24935 * 19 17 16 30 30 H 1.09007 * 110.61830 * 278.52123 * 20 19 17 31 31 H 1.09004 * 110.75367 * 155.59238 * 20 19 17 32 32 H 1.08999 * 109.88000 * 267.09329 * 22 21 20 33 33 H 1.08996 * 110.00370 * 146.00154 * 22 21 20 34 34 H 1.08008 * 119.90489 * 180.02562 * 23 12 11 35 35 H 1.08007 * 120.09457 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3954 2.1012 1.3957 5 1 1.4910 2.6234 -0.7928 6 1 3.5845 1.4145 -0.6031 7 6 2.0082 -1.2117 -0.0005 8 1 3.0474 -1.2351 -0.2935 9 6 1.3553 -2.4041 0.3819 10 6 0.2247 -2.3547 1.2200 11 6 -0.4039 -3.5111 1.5797 12 6 0.0767 -4.7387 1.1301 13 8 -0.5508 -5.8847 1.4977 14 6 -0.3088 -6.3426 2.7401 15 8 0.3759 -5.6927 3.5040 16 8 -0.8254 -7.5202 3.1356 17 6 -0.5226 -7.9518 4.4885 18 1 0.4577 -7.5863 4.7942 19 6 -0.5848 -9.4953 4.5915 20 6 -1.2779 -9.7014 5.9625 21 8 -2.2446 -8.6303 6.0157 22 6 -1.6092 -7.4639 5.4662 23 6 1.1980 -4.7967 0.3060 24 6 1.8347 -3.6494 -0.0682 25 1 -0.4849 0.8401 0.0004 26 1 -0.1463 -1.4040 1.5733 27 1 -1.2740 -3.4748 2.2186 28 1 -1.1857 -9.9151 3.7848 29 1 0.4167 -9.9257 4.5934 30 1 -0.5571 -9.6086 6.7749 31 1 -1.7759 -10.6702 6.0017 32 1 -1.1532 -6.8792 6.2652 33 1 -2.3411 -6.8565 4.9338 34 1 1.5641 -5.7527 -0.0386 35 1 2.7039 -3.6962 -0.7077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913852542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:12 Heat of formation + Delta-G solvation = -146.419104 kcal Electronic energy + Delta-G solvation = -20845.780031 eV Core-core repulsion = 17388.260724 eV Total energy + Delta-G solvation = -3457.519307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76393 -39.60985 -38.11646 -36.74936 -35.48910 -33.66412 -31.76786 -29.83474 -29.49167 -29.06415 -25.60663 -23.68496 -22.68502 -21.35115 -21.30137 -20.43313 -18.63620 -17.59362 -17.50074 -16.93530 -16.50494 -15.99983 -15.52027 -15.31789 -14.68321 -14.14672 -14.03446 -13.26551 -13.12122 -12.93535 -12.71539 -12.52578 -12.27902 -11.95273 -11.78765 -11.58892 -11.38960 -11.19920 -11.06926 -10.90268 -10.69735 -10.53744 -10.37474 -10.01745 -9.91668 -9.47512 -9.29111 -7.78218 -7.54339 -7.03140 -4.58712 1.73540 2.65065 2.88391 2.91776 2.96168 2.99747 3.08931 3.62090 3.75326 4.15970 4.30849 4.50432 4.58928 4.75268 4.90939 5.04947 5.34424 5.37582 5.44114 5.50482 5.63772 5.67402 6.03930 6.11296 6.22186 6.52775 6.74330 6.81699 6.88920 7.06645 7.17836 7.35792 7.64776 7.77607 7.80175 7.99473 8.33966 8.55895 8.61148 8.83008 9.90022 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.003318 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.483306 B = 8437.039515 C = 8713.298457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.086 0.914 9 C 0.120 3.880 10 C -0.162 4.162 11 C -0.077 4.077 12 C -0.079 4.079 13 O -0.242 6.242 14 C 0.567 3.433 15 O -0.539 6.539 16 O -0.326 6.326 17 C 0.068 3.932 18 H 0.105 0.895 19 C -0.152 4.152 20 C 0.048 3.952 21 O -0.372 6.372 22 C 0.032 3.968 23 C -0.065 4.065 24 C -0.222 4.222 25 H 0.287 0.713 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -11.236 7.283 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.104 0.896 9 C 0.117 3.883 10 C -0.182 4.182 11 C -0.096 4.096 12 C -0.121 4.121 13 O -0.157 6.157 14 C 0.378 3.622 15 O -0.437 6.437 16 O -0.245 6.245 17 C 0.013 3.987 18 H 0.123 0.877 19 C -0.189 4.189 20 C -0.029 4.029 21 O -0.291 6.291 22 C -0.045 4.045 23 C -0.084 4.084 24 C -0.241 4.241 25 H 0.098 0.902 26 H 0.143 0.857 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.234 -11.013 7.430 13.342 hybrid contribution 0.602 0.869 0.045 1.058 sum -0.632 -10.144 7.475 12.616 Atomic orbital electron populations 1.69838 1.07817 1.30032 1.32104 1.26077 0.94849 1.01932 0.91917 0.86173 0.80595 0.79870 0.79482 1.19002 1.19980 1.18258 1.19765 0.98603 0.91205 1.37357 0.89631 1.17769 0.90753 0.92242 0.87575 1.20954 0.98992 0.96723 1.01485 1.20535 0.98285 0.92188 0.98550 1.17967 1.02570 0.81079 1.10479 1.84695 1.64016 1.40901 1.26105 1.22031 0.76284 0.79751 0.84132 1.91028 1.40135 1.57894 1.54665 1.86380 1.70354 1.34876 1.32871 1.24231 1.00577 0.94996 0.78943 0.87692 1.23281 1.03252 0.92852 0.99537 1.23570 0.91741 0.92218 0.95334 1.88918 1.36915 1.19783 1.83447 1.23629 0.95851 0.88986 0.96074 1.20283 0.92477 0.97836 0.97820 1.20565 1.03578 0.92266 1.07694 0.90230 0.85707 0.88759 0.88476 0.88766 0.91602 0.88092 0.90513 0.88559 0.88385 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.92 10.95 55.55 0.61 -18.31 16 2 C 0.07 1.73 5.13 -17.34 -0.09 1.64 16 3 Si 0.92 17.52 29.60 -169.99 -5.03 12.49 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -11.09 9.04 -37.82 -0.34 -11.43 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.12 3.10 5.58 -106.81 -0.60 2.51 16 10 C -0.16 -4.19 8.65 -39.25 -0.34 -4.53 16 11 C -0.08 -1.89 9.55 -39.84 -0.38 -2.27 16 12 C -0.08 -1.90 5.13 -38.81 -0.20 -2.10 16 13 O -0.24 -5.40 10.05 -31.82 -0.32 -5.72 16 14 C 0.57 11.61 8.82 101.05 0.89 12.50 16 15 O -0.54 -12.10 15.21 -27.41 -0.42 -12.51 16 16 O -0.33 -5.51 9.90 -47.98 -0.48 -5.98 16 17 C 0.07 0.89 3.34 -25.20 -0.08 0.81 16 18 H 0.11 1.40 7.26 -51.93 -0.38 1.02 16 19 C -0.15 -1.42 6.91 -24.72 -0.17 -1.59 16 20 C 0.05 0.41 7.72 38.21 0.29 0.70 16 21 O -0.37 -4.57 11.52 -35.23 -0.41 -4.97 16 22 C 0.03 0.40 7.53 37.73 0.28 0.69 16 23 C -0.07 -1.52 9.92 -39.84 -0.40 -1.91 16 24 C -0.22 -5.32 9.74 -39.25 -0.38 -5.70 16 25 H 0.29 6.29 8.30 -40.82 -0.34 5.96 16 26 H 0.13 3.26 6.14 -52.49 -0.32 2.94 16 27 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 28 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.31 7.97 -51.93 -0.41 0.90 16 34 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 35 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -28.88 308.03 -6.95 -35.83 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.04 Total: 5.25 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.51 Total: -10.70 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.61 Total: -18.31 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.62 Total: -29.19 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.88 -6.95 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913852542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.586 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds