Wall clock time and date at job start Tue Mar 31 2020 00:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86802 * 120.00195 * 2 1 4 4 H 1.48495 * 109.47280 * 85.51306 * 3 2 1 5 5 H 1.48494 * 109.47218 * 325.50910 * 3 2 1 6 6 H 1.48506 * 109.46839 * 205.51543 * 3 2 1 7 7 C 1.39913 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99988 * 161.74802 * 7 2 1 9 9 C 1.41222 * 119.99858 * 341.75244 * 7 2 1 10 10 C 1.40824 * 120.18043 * 335.89671 * 9 7 2 11 11 C 1.36452 * 119.80463 * 179.69329 * 10 9 7 12 12 C 1.39280 * 120.18878 * 0.58037 * 11 10 9 13 13 O 1.35734 * 119.81474 * 179.69063 * 12 11 10 14 14 C 1.34600 * 117.00276 * 282.08250 * 13 12 11 15 15 O 1.21437 * 119.99857 * 4.55909 * 14 13 12 16 16 O 1.34543 * 120.00305 * 184.56545 * 14 13 12 17 17 C 1.45199 * 117.00112 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.43732 * 328.90504 * 17 16 14 19 19 C 1.54817 * 110.48410 * 206.22201 * 17 16 14 20 20 C 1.54999 * 102.08642 * 220.44265 * 19 17 16 21 21 O 1.44378 * 103.49531 * 37.02413 * 20 19 17 22 22 C 1.43744 * 106.97497 * 319.93865 * 21 20 19 23 23 C 1.39282 * 120.36900 * 359.71553 * 12 11 10 24 24 C 1.36444 * 120.18848 * 359.97438 * 23 12 11 25 25 H 0.96998 * 119.99239 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.09584 * 359.97311 * 10 9 7 27 27 H 1.08005 * 119.90213 * 180.29061 * 11 10 9 28 28 H 1.08998 * 110.90953 * 338.63707 * 19 17 16 29 29 H 1.09000 * 110.90821 * 102.24935 * 19 17 16 30 30 H 1.09007 * 110.61830 * 278.52123 * 20 19 17 31 31 H 1.09004 * 110.75367 * 155.59238 * 20 19 17 32 32 H 1.08999 * 109.88000 * 267.09329 * 22 21 20 33 33 H 1.08996 * 110.00370 * 146.00154 * 22 21 20 34 34 H 1.08008 * 119.90489 * 180.02562 * 23 12 11 35 35 H 1.08007 * 120.09457 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3954 2.1012 1.3957 5 1 1.4910 2.6234 -0.7928 6 1 3.5845 1.4145 -0.6031 7 6 2.0082 -1.2117 -0.0005 8 1 3.0474 -1.2351 -0.2935 9 6 1.3553 -2.4041 0.3819 10 6 0.2247 -2.3547 1.2200 11 6 -0.4039 -3.5111 1.5797 12 6 0.0767 -4.7387 1.1301 13 8 -0.5508 -5.8847 1.4977 14 6 -0.3088 -6.3426 2.7401 15 8 0.3759 -5.6927 3.5040 16 8 -0.8254 -7.5202 3.1356 17 6 -0.5226 -7.9518 4.4885 18 1 0.4577 -7.5863 4.7942 19 6 -0.5848 -9.4953 4.5915 20 6 -1.2779 -9.7014 5.9625 21 8 -2.2446 -8.6303 6.0157 22 6 -1.6092 -7.4639 5.4662 23 6 1.1980 -4.7967 0.3060 24 6 1.8347 -3.6494 -0.0682 25 1 -0.4849 0.8401 0.0004 26 1 -0.1463 -1.4040 1.5733 27 1 -1.2740 -3.4748 2.2186 28 1 -1.1857 -9.9151 3.7848 29 1 0.4167 -9.9257 4.5934 30 1 -0.5571 -9.6086 6.7749 31 1 -1.7759 -10.6702 6.0017 32 1 -1.1532 -6.8792 6.2652 33 1 -2.3411 -6.8565 4.9338 34 1 1.5641 -5.7527 -0.0386 35 1 2.7039 -3.6962 -0.7077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913852542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:09 Heat of formation + Delta-G solvation = -161.893257 kcal Electronic energy + Delta-G solvation = -20846.451041 eV Core-core repulsion = 17388.260724 eV Total energy + Delta-G solvation = -3458.190317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.32661 -40.86150 -39.58002 -38.42779 -37.11636 -35.48224 -32.70952 -31.71386 -31.30286 -30.02679 -27.40984 -25.09379 -23.73445 -23.22736 -22.58026 -21.99856 -20.20545 -19.42986 -19.09853 -18.20894 -17.71632 -17.39671 -17.02118 -16.55046 -15.93996 -15.83065 -15.66383 -14.76658 -14.48517 -14.21913 -14.11614 -13.84556 -13.71816 -13.55416 -13.40540 -13.09851 -12.77987 -12.57357 -12.52431 -12.31300 -12.17430 -11.93903 -11.84488 -11.75491 -11.28754 -11.10653 -10.80447 -9.68800 -9.44330 -8.81218 -6.48702 0.12167 0.98086 1.02520 1.26354 1.39256 1.52391 1.54085 2.15673 2.55599 2.77701 3.19697 3.25051 3.57211 3.60184 3.81455 4.06237 4.19397 4.20940 4.22922 4.27904 4.54395 4.69338 4.76738 4.79072 4.88489 4.97354 4.98426 5.08982 5.19668 5.41730 5.49701 5.68449 5.86168 5.86351 5.92761 6.11959 6.46346 6.72916 6.74483 7.06129 8.15293 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.003318 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.483306 B = 8437.039515 C = 8713.298457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.469 4.469 8 H 0.092 0.908 9 C 0.092 3.908 10 C -0.182 4.182 11 C -0.086 4.086 12 C -0.086 4.086 13 O -0.249 6.249 14 C 0.574 3.426 15 O -0.561 6.561 16 O -0.320 6.320 17 C 0.054 3.946 18 H 0.104 0.896 19 C -0.143 4.143 20 C 0.045 3.955 21 O -0.390 6.390 22 C 0.033 3.967 23 C -0.068 4.068 24 C -0.230 4.230 25 H 0.296 0.704 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -12.179 7.737 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.496 4.496 8 H 0.110 0.890 9 C 0.089 3.911 10 C -0.202 4.202 11 C -0.105 4.105 12 C -0.128 4.128 13 O -0.164 6.164 14 C 0.386 3.614 15 O -0.461 6.461 16 O -0.239 6.239 17 C 0.000 4.000 18 H 0.122 0.878 19 C -0.180 4.180 20 C -0.030 4.030 21 O -0.309 6.309 22 C -0.044 4.044 23 C -0.086 4.086 24 C -0.249 4.249 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.430 -11.997 7.888 14.365 hybrid contribution 0.263 0.982 -0.019 1.016 sum -0.166 -11.016 7.869 13.538 Atomic orbital electron populations 1.69875 1.09341 1.31563 1.32074 1.26981 0.95547 1.05145 0.90780 0.85051 0.79290 0.75093 0.79541 1.18730 1.18964 1.17555 1.20069 0.99106 0.92015 1.38456 0.88982 1.18134 0.91239 0.93582 0.88194 1.20916 1.00010 0.96592 1.02657 1.20670 0.98591 0.92470 0.98769 1.18059 1.02635 0.81328 1.10775 1.84569 1.64222 1.40328 1.27305 1.21817 0.76009 0.80448 0.83142 1.91013 1.41257 1.58820 1.54982 1.86409 1.69675 1.32677 1.35134 1.24723 1.00618 0.97667 0.76979 0.87795 1.23376 1.05011 0.89586 1.00059 1.23878 0.91716 0.92151 0.95271 1.88902 1.38278 1.20379 1.83362 1.23545 0.95271 0.89430 0.96156 1.20568 0.92013 0.98903 0.97136 1.20814 1.04287 0.91937 1.07861 0.89296 0.86897 0.88162 0.88550 0.86128 0.89649 0.85607 0.89670 0.90238 0.85556 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.88 10.95 21.82 0.24 -39.64 16 2 C 0.03 1.59 5.13 85.24 0.44 2.03 16 3 Si 0.99 35.42 29.60 68.60 2.03 37.45 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.47 -23.81 9.04 23.41 0.21 -23.60 16 8 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 9 C 0.09 4.84 5.58 -21.28 -0.12 4.72 16 10 C -0.18 -9.72 8.65 22.49 0.19 -9.53 16 11 C -0.09 -4.35 9.55 22.10 0.21 -4.14 16 12 C -0.09 -4.16 5.13 22.77 0.12 -4.04 16 13 O -0.25 -11.07 10.05 10.89 0.11 -10.96 16 14 C 0.57 23.36 8.82 113.37 1.00 24.36 16 15 O -0.56 -25.19 15.21 27.87 0.42 -24.77 16 16 O -0.32 -10.57 9.90 -46.95 -0.46 -11.03 16 17 C 0.05 1.36 3.34 31.59 0.11 1.46 16 18 H 0.10 2.64 7.26 -2.39 -0.02 2.62 16 19 C -0.14 -2.29 6.91 31.90 0.22 -2.07 16 20 C 0.05 0.64 7.72 72.67 0.56 1.20 16 21 O -0.39 -8.92 11.52 -148.98 -1.72 -10.64 16 22 C 0.03 0.82 7.53 72.36 0.54 1.36 16 23 C -0.07 -3.11 9.92 22.10 0.22 -2.89 16 24 C -0.23 -11.04 9.74 22.48 0.22 -10.82 16 25 H 0.30 13.08 8.30 -92.71 -0.77 12.31 16 26 H 0.11 6.16 6.14 -2.91 -0.02 6.14 16 27 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 28 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.20 7.97 -2.39 -0.02 2.18 16 34 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -62.65 308.03 5.65 -57.00 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.11 Total: 24.56 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.92 Total: -21.97 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.24 Total: -39.64 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.65 Total: -57.40 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -62.65 5.65 -57.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913852542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.898 kcal (2) G-P(sol) polarization free energy of solvation -62.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds