Wall clock time and date at job start Mon Mar 30 2020 23:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48494 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47107 * 300.00023 * 3 2 1 6 6 H 1.48502 * 109.47182 * 59.99771 * 3 2 1 7 7 C 1.38798 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99867 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47426 * 180.02562 * 10 9 7 12 12 O 1.20823 * 119.99644 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00419 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00450 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47667 * 179.97438 * 14 13 11 16 16 C 1.32564 * 120.00601 * 135.99795 * 15 14 13 17 17 C 1.47813 * 119.99292 * 8.07111 * 16 15 14 18 18 C 1.39538 * 120.14628 * 34.97943 * 17 16 15 19 19 C 1.37970 * 119.85877 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.14141 * 359.97438 * 19 18 17 21 21 C 1.38346 * 120.28451 * 0.02562 * 20 19 18 22 22 C 1.37978 * 120.14112 * 0.02562 * 21 20 19 23 23 H 0.96993 * 120.00141 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46978 * 59.99885 * 10 9 7 25 25 H 1.09001 * 109.47560 * 300.00272 * 10 9 7 26 26 H 1.09008 * 109.46904 * 60.00253 * 14 13 11 27 27 H 1.08996 * 109.47047 * 300.00322 * 14 13 11 28 28 H 1.08008 * 119.99961 * 316.00391 * 15 14 13 29 29 H 1.07991 * 120.00643 * 188.06451 * 16 15 14 30 30 H 1.07997 * 120.06681 * 359.95796 * 18 17 16 31 31 H 1.07991 * 119.93080 * 180.02562 * 19 18 17 32 32 H 1.07996 * 119.85638 * 179.74339 * 20 19 18 33 33 H 1.07999 * 119.92866 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.06767 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7958 -5.5016 -0.0010 13 8 2.8408 -6.3388 0.0003 14 6 2.2613 -7.6701 0.0002 15 6 3.3634 -8.6979 0.0001 16 6 3.2851 -9.7540 0.7975 17 6 2.0426 -10.0189 1.5531 18 6 0.8021 -9.7170 0.9900 19 6 -0.3539 -9.9672 1.7003 20 6 -0.2851 -10.5166 2.9682 21 6 0.9417 -10.8182 3.5322 22 6 2.1052 -10.5719 2.8326 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7312 0.8905 25 1 3.1247 -3.7313 -0.8894 26 1 1.6455 -7.7982 -0.8901 27 1 1.6448 -7.7980 0.8899 28 1 4.2172 -8.5740 -0.6497 29 1 4.1289 -10.4208 0.8950 30 1 0.7471 -9.2882 0.0003 31 1 -1.3146 -9.7344 1.2654 32 1 -1.1927 -10.7067 3.5218 33 1 0.9888 -11.2466 4.5224 34 1 3.0622 -10.8082 3.2739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:26 Heat of formation + Delta-G solvation = -43.580473 kcal Electronic energy + Delta-G solvation = -17760.928987 eV Core-core repulsion = 14750.621968 eV Total energy + Delta-G solvation = -3010.307018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15147 -39.39672 -36.43136 -34.81225 -32.48263 -31.28372 -30.32390 -29.51567 -26.70232 -25.52839 -22.73793 -22.69558 -20.91333 -19.56551 -17.89547 -17.38597 -16.69161 -16.49933 -15.89790 -15.26825 -15.17625 -14.84586 -14.46524 -14.12310 -13.73869 -13.57561 -13.16450 -12.84028 -12.70863 -12.51250 -12.10224 -11.92915 -11.27426 -11.09773 -11.08490 -11.03959 -10.80645 -10.67877 -10.06430 -9.91491 -9.87394 -9.12188 -9.08673 -8.49593 -8.35003 -6.59871 -6.27265 -3.99729 0.74485 1.20872 1.99052 2.67969 2.79379 3.19869 3.25374 3.30370 3.55349 3.67052 4.14948 4.45879 4.63209 4.71922 4.79754 4.89719 5.08564 5.09853 5.15302 5.23637 5.28868 5.34238 5.50200 5.61597 5.73363 5.79006 5.83825 6.06691 6.09110 6.13924 6.32244 6.34377 6.49323 6.70946 6.78566 7.55956 8.18523 8.30861 9.18380 10.80313 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032180 B = 0.003081 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.891839 B = 9084.508425 C = 9507.366317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.059 6.059 10 C -0.128 4.128 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.360 6.360 14 C 0.083 3.917 15 C -0.138 4.138 16 C -0.109 4.109 17 C -0.067 4.067 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.107 4.107 23 H 0.269 0.731 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 -21.411 3.224 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.373 6.373 13 O -0.278 6.278 14 C 0.010 3.990 15 C -0.156 4.156 16 C -0.127 4.127 17 C -0.067 4.067 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.125 4.125 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.513 -21.597 3.225 22.117 hybrid contribution 1.808 1.184 -0.015 2.162 sum 5.322 -20.413 3.211 21.338 Atomic orbital electron populations 1.70023 1.05984 1.27519 1.46722 1.25009 0.95069 0.99125 0.94351 0.86064 0.79619 0.81585 0.77933 1.19495 1.20509 1.20509 1.22890 0.95072 0.91156 1.59220 0.90528 1.85411 1.04402 0.96573 1.96875 1.23300 1.06956 0.90887 1.06479 1.23300 0.85204 0.87067 0.72393 1.90661 1.16919 1.85640 1.44126 1.86503 1.41394 1.15108 1.84792 1.22442 0.94694 0.78769 1.03109 1.23045 0.99854 0.94094 0.98597 1.21682 0.96071 0.99072 0.95837 1.19125 0.93101 0.99767 0.94734 1.21557 0.91900 0.98997 1.00559 1.21160 0.98534 0.98741 0.95030 1.21260 0.97897 0.98846 0.95567 1.21107 0.92518 1.00444 0.99953 1.21250 0.98560 0.98823 0.93892 0.92130 0.87921 0.87902 0.90364 0.89489 0.85251 0.85185 0.85464 0.85606 0.85976 0.85938 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 10 C -0.13 -2.66 6.27 36.01 0.23 -2.44 16 11 C 0.48 9.44 7.98 36.01 0.29 9.73 16 12 O -0.49 -10.87 15.61 -18.75 -0.29 -11.16 16 13 O -0.36 -5.96 10.20 -39.23 -0.40 -6.36 16 14 C 0.08 1.13 4.05 36.00 0.15 1.28 16 15 C -0.14 -1.45 9.85 -36.22 -0.36 -1.81 16 16 C -0.11 -1.03 9.81 -37.57 -0.37 -1.39 16 17 C -0.07 -0.72 5.19 -105.01 -0.54 -1.26 16 18 C -0.11 -1.26 7.41 -39.20 -0.29 -1.55 16 19 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 20 C -0.12 -1.13 10.04 -39.50 -0.40 -1.52 16 21 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 22 C -0.11 -1.03 9.79 -39.19 -0.38 -1.41 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 25 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 26 H 0.08 1.02 7.51 -51.92 -0.39 0.63 16 27 H 0.09 1.26 5.28 -51.93 -0.27 0.99 16 28 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.37 5.79 -52.49 -0.30 1.06 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -32.82 315.24 -8.62 -41.44 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.89 Total: 0.37 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.28 Total: -16.34 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.10 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.69 Total: -17.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.82 -8.62 -41.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.137 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds