Wall clock time and date at job start Mon Mar 30 2020 23:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48494 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47107 * 300.00023 * 3 2 1 6 6 H 1.48502 * 109.47182 * 59.99771 * 3 2 1 7 7 C 1.38798 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99867 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47426 * 180.02562 * 10 9 7 12 12 O 1.20823 * 119.99644 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00419 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00450 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47667 * 179.97438 * 14 13 11 16 16 C 1.32564 * 120.00601 * 135.99795 * 15 14 13 17 17 C 1.47813 * 119.99292 * 8.07111 * 16 15 14 18 18 C 1.39538 * 120.14628 * 34.97943 * 17 16 15 19 19 C 1.37970 * 119.85877 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.14141 * 359.97438 * 19 18 17 21 21 C 1.38346 * 120.28451 * 0.02562 * 20 19 18 22 22 C 1.37978 * 120.14112 * 0.02562 * 21 20 19 23 23 H 0.96993 * 120.00141 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46978 * 59.99885 * 10 9 7 25 25 H 1.09001 * 109.47560 * 300.00272 * 10 9 7 26 26 H 1.09008 * 109.46904 * 60.00253 * 14 13 11 27 27 H 1.08996 * 109.47047 * 300.00322 * 14 13 11 28 28 H 1.08008 * 119.99961 * 316.00391 * 15 14 13 29 29 H 1.07991 * 120.00643 * 188.06451 * 16 15 14 30 30 H 1.07997 * 120.06681 * 359.95796 * 18 17 16 31 31 H 1.07991 * 119.93080 * 180.02562 * 19 18 17 32 32 H 1.07996 * 119.85638 * 179.74339 * 20 19 18 33 33 H 1.07999 * 119.92866 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.06767 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7958 -5.5016 -0.0010 13 8 2.8408 -6.3388 0.0003 14 6 2.2613 -7.6701 0.0002 15 6 3.3634 -8.6979 0.0001 16 6 3.2851 -9.7540 0.7975 17 6 2.0426 -10.0189 1.5531 18 6 0.8021 -9.7170 0.9900 19 6 -0.3539 -9.9672 1.7003 20 6 -0.2851 -10.5166 2.9682 21 6 0.9417 -10.8182 3.5322 22 6 2.1052 -10.5719 2.8326 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7312 0.8905 25 1 3.1247 -3.7313 -0.8894 26 1 1.6455 -7.7982 -0.8901 27 1 1.6448 -7.7980 0.8899 28 1 4.2172 -8.5740 -0.6497 29 1 4.1289 -10.4208 0.8950 30 1 0.7471 -9.2882 0.0003 31 1 -1.3146 -9.7344 1.2654 32 1 -1.1927 -10.7067 3.5218 33 1 0.9888 -11.2466 4.5224 34 1 3.0622 -10.8082 3.2739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:25 Heat of formation + Delta-G solvation = -61.045832 kcal Electronic energy + Delta-G solvation = -17761.686342 eV Core-core repulsion = 14750.621968 eV Total energy + Delta-G solvation = -3011.064373 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55559 -40.25472 -37.79744 -35.75310 -34.61439 -32.08511 -31.59622 -30.63862 -27.89182 -27.52467 -23.59375 -23.49652 -22.34495 -20.42605 -19.82663 -18.79919 -17.86454 -17.77029 -16.92631 -16.87479 -16.44505 -16.10269 -15.88949 -15.49035 -14.80885 -14.62218 -14.37736 -14.25532 -13.76577 -13.57803 -13.53506 -13.18447 -12.92142 -12.87786 -12.62844 -12.10370 -11.98885 -11.77190 -11.71378 -11.62612 -11.17803 -10.80796 -10.38428 -9.85958 -9.27828 -8.74472 -8.37933 -6.17897 -0.04125 0.44346 0.93206 1.10159 1.31409 1.42328 1.45006 1.57703 2.00466 2.23509 2.88382 2.97219 3.26514 3.61523 3.81464 3.85511 4.03525 4.04017 4.10932 4.16843 4.23873 4.27602 4.42754 4.52428 4.56230 4.75682 5.00402 5.09063 5.24416 5.30355 5.38830 5.41154 5.57671 5.58417 5.72990 6.05343 6.18108 6.66057 7.03865 8.71634 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032180 B = 0.003081 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.891839 B = 9084.508425 C = 9507.366317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.086 0.914 9 S -0.138 6.138 10 C -0.108 4.108 11 C 0.487 3.513 12 O -0.520 6.520 13 O -0.350 6.350 14 C 0.080 3.920 15 C -0.153 4.153 16 C -0.090 4.090 17 C -0.087 4.087 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.112 4.112 23 H 0.273 0.727 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -22.108 3.931 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.104 0.896 9 S 0.089 5.911 10 C -0.257 4.257 11 C 0.329 3.671 12 O -0.409 6.409 13 O -0.268 6.268 14 C 0.007 3.993 15 C -0.170 4.170 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.129 4.129 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.167 0.833 29 H 0.180 0.820 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.861 -22.324 3.930 23.412 hybrid contribution 1.067 1.202 -0.183 1.618 sum 6.928 -21.122 3.746 22.543 Atomic orbital electron populations 1.70173 1.07946 1.28748 1.47775 1.26134 0.95997 1.03310 0.93518 0.84865 0.78610 0.76116 0.78117 1.18013 1.19852 1.19887 1.23232 0.95536 0.91515 1.59248 0.89560 1.85536 1.09292 0.99129 1.97169 1.23099 1.04271 0.89958 1.08329 1.23028 0.84820 0.87482 0.71750 1.90655 1.18312 1.86130 1.45773 1.86472 1.40540 1.15803 1.83955 1.22686 0.96092 0.77741 1.02748 1.23007 0.99743 0.93878 1.00411 1.21984 0.96166 0.98665 0.93928 1.19397 0.93315 1.00361 0.95663 1.21670 0.92773 0.99771 1.00723 1.21380 0.98736 0.99497 0.95888 1.21574 0.99185 0.98274 0.95243 1.21482 0.92155 0.99853 1.00999 1.21597 0.99873 0.98006 0.93449 0.91836 0.86079 0.85840 0.90395 0.90594 0.83336 0.82034 0.86081 0.85239 0.84127 0.83410 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.06 13.22 21.65 0.29 -54.77 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -30.89 9.50 67.95 0.65 -30.25 16 8 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.14 -7.58 20.58 -56.49 -1.16 -8.74 16 10 C -0.11 -4.42 6.27 71.24 0.45 -3.98 16 11 C 0.49 19.13 7.98 71.24 0.57 19.70 16 12 O -0.52 -23.75 15.61 21.97 0.34 -23.40 16 13 O -0.35 -11.29 10.20 -51.33 -0.52 -11.82 16 14 C 0.08 2.15 4.05 71.23 0.29 2.44 16 15 C -0.15 -2.94 9.85 24.53 0.24 -2.70 16 16 C -0.09 -1.49 9.81 23.65 0.23 -1.26 16 17 C -0.09 -1.75 5.19 -20.12 -0.10 -1.86 16 18 C -0.13 -2.97 7.41 22.52 0.17 -2.80 16 19 C -0.14 -2.94 10.03 22.23 0.22 -2.71 16 20 C -0.12 -2.28 10.04 22.32 0.22 -2.05 16 21 C -0.13 -2.08 10.03 22.23 0.22 -1.86 16 22 C -0.11 -1.90 9.79 22.52 0.22 -1.68 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.12 4.51 8.14 -2.40 -0.02 4.49 16 25 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 26 H 0.08 2.07 7.51 -2.38 -0.02 2.05 16 27 H 0.08 2.24 5.28 -2.39 -0.01 2.22 16 28 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.16 1.65 8.06 -2.92 -0.02 1.63 16 30 H 0.12 2.74 5.79 -2.91 -0.02 2.72 16 31 H 0.13 2.50 8.06 -2.92 -0.02 2.48 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -71.73 315.24 5.91 -65.82 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.10 Total: 15.50 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.84 Total: -27.68 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.29 Total: -54.77 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.18 Total: -35.22 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -71.73 5.91 -65.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.771 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds