Wall clock time and date at job start Mon Mar 30 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46766 * 240.00128 * 3 2 1 5 5 H 1.48501 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46914 * 119.99982 * 3 2 1 7 7 C 1.38794 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00396 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.81008 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46959 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00224 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99727 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 179.97438 * 14 13 11 16 16 C 1.32567 * 119.99735 * 134.99989 * 15 14 13 17 17 C 1.47819 * 119.99647 * 180.02562 * 16 15 14 18 18 C 1.39526 * 120.14172 * 359.72200 * 17 16 15 19 19 C 1.37974 * 119.85701 * 179.67775 * 18 17 16 20 20 C 1.38342 * 120.13785 * 0.62478 * 19 18 17 21 21 C 1.38341 * 120.28937 * 359.67572 * 20 19 18 22 22 C 1.37982 * 120.13882 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99662 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46793 * 60.00134 * 10 9 7 25 25 H 1.09001 * 109.46920 * 300.00319 * 10 9 7 26 26 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 27 27 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 28 28 H 1.08001 * 120.00025 * 314.99738 * 15 14 13 29 29 H 1.08001 * 120.00240 * 359.97438 * 16 15 14 30 30 H 1.08005 * 120.07328 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.93568 * 180.31910 * 19 18 17 32 32 H 1.08001 * 119.86004 * 179.69803 * 20 19 18 33 33 H 1.08004 * 119.93283 * 180.02562 * 21 20 19 34 34 H 1.08003 * 120.06626 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8406 -6.3389 0.0007 14 6 2.2609 -7.6702 0.0007 15 6 3.3631 -8.6980 0.0008 16 6 3.2941 -9.7437 0.8127 17 6 4.3755 -10.7515 0.8132 18 6 5.4672 -10.6081 -0.0437 19 6 6.4765 -11.5488 -0.0336 20 6 6.4013 -12.6392 0.8145 21 6 5.3185 -12.7905 1.6621 22 6 4.3061 -11.8530 1.6668 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 1.6443 -7.7980 0.8905 27 1 1.6452 -7.7984 -0.8895 28 1 4.2091 -8.5826 -0.6605 29 1 2.4483 -9.8588 1.4743 30 1 5.5245 -9.7600 -0.7100 31 1 7.3247 -11.4363 -0.6927 32 1 7.1915 -13.3754 0.8152 33 1 5.2659 -13.6438 2.3221 34 1 3.4615 -11.9721 2.3293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684449.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:32 Heat of formation + Delta-G solvation = -50.926104 kcal Electronic energy + Delta-G solvation = -17107.973049 eV Core-core repulsion = 14097.347500 eV Total energy + Delta-G solvation = -3010.625549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05470 -39.46582 -36.46229 -34.78988 -32.48961 -31.30873 -30.93019 -29.55483 -26.30326 -25.51886 -23.25248 -22.32193 -20.97369 -19.69207 -17.91671 -17.58318 -17.04138 -16.33200 -16.00483 -15.42739 -15.07305 -14.84968 -14.31321 -14.09291 -13.78728 -13.56371 -13.29932 -13.18955 -12.67402 -12.57197 -12.15972 -11.74941 -11.45104 -11.16252 -11.10620 -11.06518 -10.84389 -10.80895 -10.31642 -10.03557 -9.91791 -9.26987 -9.11152 -8.43729 -8.37064 -6.61036 -6.27541 -4.00462 0.56454 1.09291 2.06604 2.64395 2.75636 3.21763 3.24256 3.27499 3.52193 3.63507 4.14494 4.34107 4.47173 4.64860 4.74596 4.87461 5.00797 5.08097 5.08988 5.12955 5.21333 5.30631 5.35032 5.57031 5.64313 5.70767 5.77437 5.95372 6.07601 6.10565 6.19303 6.29784 6.46967 6.65451 6.67715 7.54726 8.14869 8.29799 9.17760 10.79875 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.045022 B = 0.002369 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.762458 B =11818.904853 C =12238.721329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.358 6.358 14 C 0.094 3.906 15 C -0.136 4.136 16 C -0.110 4.110 17 C -0.053 4.053 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.109 4.109 23 H 0.270 0.730 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.272 -23.176 1.201 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.374 6.374 13 O -0.276 6.276 14 C 0.021 3.979 15 C -0.153 4.153 16 C -0.128 4.128 17 C -0.053 4.053 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.127 4.127 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.609 -23.359 1.202 25.287 hybrid contribution 1.806 1.139 -0.004 2.135 sum 11.415 -22.221 1.199 25.010 Atomic orbital electron populations 1.70002 1.05984 1.27749 1.46503 1.25006 0.95076 0.99117 0.94331 0.86172 0.79201 0.80929 0.78914 1.19835 1.20778 1.19830 1.22802 0.94998 0.91158 1.59504 0.90616 1.85414 1.04363 0.96567 1.96896 1.23303 1.06984 0.90829 1.06520 1.23324 0.85186 0.87076 0.72334 1.90669 1.16927 1.85624 1.44136 1.86536 1.41244 1.14979 1.84870 1.21867 0.94208 0.78673 1.03192 1.23107 0.99146 0.94071 0.99022 1.21634 0.97620 0.94673 0.98861 1.19026 0.94630 0.94924 0.96765 1.21393 0.93672 0.99368 0.98711 1.21115 0.98740 0.94587 0.99198 1.21233 0.98308 0.98055 0.96456 1.21107 0.94325 0.99199 0.99232 1.21294 0.99010 0.93760 0.98612 0.92009 0.87873 0.87863 0.90518 0.89903 0.85718 0.85866 0.85520 0.85873 0.86112 0.85938 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.08 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.57 20.58 -107.50 -2.21 -3.78 16 10 C -0.13 -2.62 6.27 36.00 0.23 -2.39 16 11 C 0.48 9.21 7.97 36.00 0.29 9.49 16 12 O -0.49 -10.68 15.61 -18.75 -0.29 -10.98 16 13 O -0.36 -5.71 10.20 -39.26 -0.40 -6.11 16 14 C 0.09 1.20 5.88 36.01 0.21 1.41 16 15 C -0.14 -1.41 9.32 -36.22 -0.34 -1.74 16 16 C -0.11 -1.04 9.51 -37.57 -0.36 -1.40 16 17 C -0.05 -0.50 5.87 -105.02 -0.62 -1.12 16 18 C -0.11 -1.02 9.40 -39.20 -0.37 -1.38 16 19 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 20 C -0.12 -0.90 10.04 -39.51 -0.40 -1.30 16 21 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 22 C -0.11 -0.91 9.79 -39.19 -0.38 -1.29 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.10 1.95 8.14 -51.91 -0.42 1.53 16 25 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 26 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 27 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.13 1.19 6.04 -52.49 -0.32 0.87 16 29 H 0.12 1.01 7.92 -52.49 -0.42 0.59 16 30 H 0.13 1.00 6.17 -52.48 -0.32 0.68 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -32.58 320.36 -8.67 -41.25 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.97 Total: -1.19 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.33 Total: -15.11 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.73 Total: -25.02 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.69 Total: -17.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.58 -8.67 -41.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684449.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.679 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds