Wall clock time and date at job start Mon Mar 30 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46766 * 240.00128 * 3 2 1 5 5 H 1.48501 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46914 * 119.99982 * 3 2 1 7 7 C 1.38794 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00396 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.81008 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46959 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00224 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99727 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 179.97438 * 14 13 11 16 16 C 1.32567 * 119.99735 * 134.99989 * 15 14 13 17 17 C 1.47819 * 119.99647 * 180.02562 * 16 15 14 18 18 C 1.39526 * 120.14172 * 359.72200 * 17 16 15 19 19 C 1.37974 * 119.85701 * 179.67775 * 18 17 16 20 20 C 1.38342 * 120.13785 * 0.62478 * 19 18 17 21 21 C 1.38341 * 120.28937 * 359.67572 * 20 19 18 22 22 C 1.37982 * 120.13882 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99662 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46793 * 60.00134 * 10 9 7 25 25 H 1.09001 * 109.46920 * 300.00319 * 10 9 7 26 26 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 27 27 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 28 28 H 1.08001 * 120.00025 * 314.99738 * 15 14 13 29 29 H 1.08001 * 120.00240 * 359.97438 * 16 15 14 30 30 H 1.08005 * 120.07328 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.93568 * 180.31910 * 19 18 17 32 32 H 1.08001 * 119.86004 * 179.69803 * 20 19 18 33 33 H 1.08004 * 119.93283 * 180.02562 * 21 20 19 34 34 H 1.08003 * 120.06626 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8406 -6.3389 0.0007 14 6 2.2609 -7.6702 0.0007 15 6 3.3631 -8.6980 0.0008 16 6 3.2941 -9.7437 0.8127 17 6 4.3755 -10.7515 0.8132 18 6 5.4672 -10.6081 -0.0437 19 6 6.4765 -11.5488 -0.0336 20 6 6.4013 -12.6392 0.8145 21 6 5.3185 -12.7905 1.6621 22 6 4.3061 -11.8530 1.6668 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 1.6443 -7.7980 0.8905 27 1 1.6452 -7.7984 -0.8895 28 1 4.2091 -8.5826 -0.6605 29 1 2.4483 -9.8588 1.4743 30 1 5.5245 -9.7600 -0.7100 31 1 7.3247 -11.4363 -0.6927 32 1 7.1915 -13.3754 0.8152 33 1 5.2659 -13.6438 2.3221 34 1 3.4615 -11.9721 2.3293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684449.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:30 Heat of formation + Delta-G solvation = -67.861575 kcal Electronic energy + Delta-G solvation = -17108.707426 eV Core-core repulsion = 14097.347500 eV Total energy + Delta-G solvation = -3011.359926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49401 -40.08699 -37.81121 -35.65087 -34.60924 -32.02734 -31.82223 -30.88105 -27.75824 -27.13026 -23.90297 -23.06797 -22.34931 -20.49187 -19.83320 -18.76430 -18.11493 -17.60003 -17.22918 -16.88921 -16.27971 -15.96889 -15.82655 -15.22529 -14.82013 -14.60149 -14.23905 -14.12729 -13.93446 -13.71541 -13.58881 -13.18360 -12.87110 -12.69693 -12.56813 -12.10294 -12.00602 -11.80152 -11.76243 -11.60963 -11.14805 -11.12497 -10.38626 -9.86074 -9.13214 -8.73814 -8.37104 -6.17115 -0.12665 0.50208 0.98416 1.10873 1.37197 1.45235 1.48035 1.56069 2.00327 2.24363 2.97791 2.99664 3.25904 3.51099 3.80688 3.92745 4.06528 4.12765 4.17523 4.18367 4.25892 4.36511 4.43347 4.46816 4.58655 4.64437 5.03917 5.13236 5.23318 5.29875 5.41102 5.45044 5.60403 5.61820 5.78265 6.09127 6.18149 6.66894 7.04413 8.71828 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.045022 B = 0.002369 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.762458 B =11818.904853 C =12238.721329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.138 6.138 10 C -0.109 4.109 11 C 0.489 3.511 12 O -0.520 6.520 13 O -0.350 6.350 14 C 0.092 3.908 15 C -0.151 4.151 16 C -0.094 4.094 17 C -0.078 4.078 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.117 4.117 23 H 0.273 0.727 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.519 -24.108 1.506 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.089 5.911 10 C -0.257 4.257 11 C 0.331 3.669 12 O -0.409 6.409 13 O -0.267 6.267 14 C 0.019 3.981 15 C -0.169 4.169 16 C -0.112 4.112 17 C -0.078 4.078 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.135 4.135 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.879 -24.321 1.507 27.109 hybrid contribution 1.187 1.178 -0.069 1.674 sum 13.066 -23.143 1.438 26.615 Atomic orbital electron populations 1.70159 1.07921 1.28852 1.47645 1.26131 0.96005 1.03309 0.93547 0.84980 0.77789 0.75537 0.79558 1.18622 1.20367 1.18638 1.23164 0.95528 0.91549 1.59405 0.89555 1.85525 1.09309 0.99118 1.97182 1.23098 1.04245 0.90016 1.08348 1.22991 0.84768 0.87419 0.71679 1.90663 1.18287 1.86106 1.45819 1.86505 1.40431 1.15735 1.84029 1.22118 0.95283 0.77241 1.03492 1.22939 0.99184 0.94092 1.00675 1.21804 0.97661 0.94011 0.97718 1.19164 0.95021 0.95646 0.97992 1.21594 0.94026 0.99973 0.98899 1.21408 0.99053 0.94541 0.99666 1.21600 0.98766 0.98164 0.95698 1.21442 0.94001 0.99642 0.99483 1.21562 0.99812 0.93562 0.98522 0.91845 0.86010 0.85897 0.90288 0.89769 0.85030 0.84820 0.85145 0.84169 0.83875 0.83768 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 13.22 21.65 0.29 -54.59 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 42.90 29.55 68.60 2.03 44.92 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.55 -30.78 9.50 67.95 0.65 -30.13 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.14 -7.51 20.58 -56.49 -1.16 -8.67 16 10 C -0.11 -4.36 6.27 71.23 0.45 -3.91 16 11 C 0.49 18.59 7.97 71.23 0.57 19.16 16 12 O -0.52 -23.06 15.61 21.97 0.34 -22.72 16 13 O -0.35 -10.80 10.20 -51.44 -0.52 -11.33 16 14 C 0.09 2.28 5.88 71.24 0.42 2.70 16 15 C -0.15 -3.00 9.32 24.53 0.23 -2.77 16 16 C -0.09 -1.67 9.51 23.66 0.22 -1.45 16 17 C -0.08 -1.38 5.87 -20.12 -0.12 -1.50 16 18 C -0.13 -2.13 9.40 22.52 0.21 -1.92 16 19 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 20 C -0.12 -1.55 10.04 22.32 0.22 -1.32 16 21 C -0.13 -1.63 10.03 22.23 0.22 -1.40 16 22 C -0.12 -1.75 9.79 22.52 0.22 -1.53 16 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 24 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 25 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 26 H 0.08 1.92 7.87 -2.38 -0.02 1.90 16 27 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 28 H 0.13 2.39 6.04 -2.91 -0.02 2.38 16 29 H 0.13 2.01 7.92 -2.91 -0.02 1.99 16 30 H 0.13 1.95 6.17 -2.91 -0.02 1.94 16 31 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -70.52 320.36 6.05 -64.47 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.10 Total: 12.25 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 3.98 Total: -24.34 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.29 Total: -54.59 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.18 Total: -34.05 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.67 kcal Total: -70.52 6.05 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684449.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.393 kcal (2) G-P(sol) polarization free energy of solvation -70.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds