Wall clock time and date at job start Tue Mar 31 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00407 * 2 1 4 4 H 1.48505 * 109.47022 * 240.00208 * 3 2 1 5 5 H 1.48500 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47516 * 119.99928 * 3 2 1 7 7 C 1.37876 * 119.99434 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47047 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46755 * 179.97438 * 10 9 7 12 12 C 1.34758 * 116.99836 * 179.97438 * 11 10 9 13 13 O 1.21506 * 119.99306 * 0.02562 * 12 11 10 14 14 C 1.47469 * 119.99853 * 180.02562 * 12 11 10 15 15 C 1.39756 * 120.10621 * 359.97438 * 14 12 11 16 16 C 1.37699 * 119.96278 * 180.09662 * 15 14 12 17 17 C 1.39034 * 120.27599 * 359.94724 * 16 15 14 18 18 C 1.39275 * 120.04948 * 359.95042 * 17 16 15 19 19 C 1.38265 * 119.97027 * 0.13140 * 18 17 16 20 20 O 1.36154 * 120.75669 * 180.38963 * 18 17 16 21 21 C 1.43168 * 116.68331 * 342.63059 * 20 18 17 22 22 C 1.53459 * 108.23031 * 46.25975 * 21 20 18 23 23 O 1.35953 * 119.23516 * 179.80426 * 17 16 15 24 24 H 0.97008 * 119.99330 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47351 * 60.00288 * 9 7 2 26 26 H 1.09003 * 109.47308 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.46728 * 60.00495 * 10 9 7 28 28 H 1.08998 * 109.47138 * 299.99707 * 10 9 7 29 29 H 1.07999 * 120.01859 * 0.11542 * 15 14 12 30 30 H 1.07998 * 119.86461 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.02259 * 180.17046 * 19 18 17 32 32 H 1.09009 * 109.71177 * 286.57361 * 21 20 18 33 33 H 1.08998 * 109.71387 * 165.94385 * 21 20 18 34 34 H 1.08998 * 109.70371 * 180.51658 * 22 21 20 35 35 H 1.09002 * 109.73754 * 59.92592 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 8 1.5189 -4.9196 0.0032 12 6 2.2528 -6.0498 0.0027 13 8 3.4662 -5.9862 0.0013 14 6 1.5831 -7.3637 0.0038 15 6 0.1876 -7.4392 0.0059 16 6 -0.4346 -8.6676 0.0090 17 6 0.3198 -9.8355 0.0088 18 6 1.7108 -9.7672 0.0045 19 6 2.3420 -8.5370 0.0032 20 8 2.4636 -10.9017 -0.0036 21 6 1.8031 -12.1143 0.3744 22 6 0.4590 -12.1790 -0.3634 23 8 -0.3165 -11.0370 0.0159 24 1 -0.4849 0.8402 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6245 -2.5563 0.8920 27 1 2.8723 -3.6041 0.8910 28 1 2.8710 -3.6049 -0.8890 29 1 -0.4025 -6.5347 0.0049 30 1 -1.5131 -8.7242 0.0110 31 1 3.4206 -8.4831 -0.0029 32 1 1.6322 -12.1197 1.4510 33 1 2.4174 -12.9702 0.0949 34 1 -0.0693 -13.0909 -0.0852 35 1 0.6291 -12.1667 -1.4400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916596583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:16 Heat of formation + Delta-G solvation = -140.047366 kcal Electronic energy + Delta-G solvation = -20442.336016 eV Core-core repulsion = 16985.093008 eV Total energy + Delta-G solvation = -3457.243008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57228 -39.93039 -37.68802 -37.60237 -35.99933 -33.33898 -31.73456 -30.98208 -30.27111 -28.92137 -25.63233 -24.96621 -23.48409 -22.18111 -21.00643 -20.37483 -18.99557 -18.11048 -17.54065 -16.68079 -16.16913 -15.94845 -15.90290 -15.63821 -15.29498 -14.74653 -14.52207 -14.18821 -14.10643 -13.69444 -13.36161 -13.07163 -12.49895 -12.34389 -12.06837 -11.48782 -11.45215 -11.17596 -11.06078 -10.82103 -10.72543 -10.69546 -10.28825 -9.63409 -9.62562 -9.30639 -8.93446 -8.43232 -8.38491 -6.09412 -4.13662 0.57784 1.09130 2.51197 2.73295 2.79456 3.27220 3.31324 3.35330 3.40153 3.65181 3.80821 4.26967 4.39402 4.40492 4.48701 4.79103 4.89013 4.99081 5.02956 5.11135 5.27226 5.27304 5.56203 5.82856 5.89435 6.10760 6.11254 6.18246 6.29691 6.53313 6.64953 6.95471 7.05847 7.56508 7.63531 7.87558 8.18128 8.26528 8.91616 9.50624 11.02092 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.002886 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.172827 B = 9700.287701 C =10206.630716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.351 6.351 12 C 0.505 3.495 13 O -0.514 6.514 14 C -0.116 4.116 15 C -0.052 4.052 16 C -0.127 4.127 17 C 0.080 3.920 18 C 0.033 3.967 19 C -0.050 4.050 20 O -0.305 6.305 21 C 0.020 3.980 22 C 0.019 3.981 23 O -0.304 6.304 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -25.626 0.004 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.349 3.651 13 O -0.404 6.404 14 C -0.117 4.117 15 C -0.070 4.070 16 C -0.146 4.146 17 C 0.034 3.966 18 C -0.011 4.011 19 C -0.069 4.069 20 O -0.219 6.219 21 C -0.056 4.056 22 C -0.057 4.057 23 O -0.218 6.218 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.741 -25.494 0.002 25.505 hybrid contribution 0.595 0.676 0.005 0.901 sum -0.146 -24.818 0.007 24.819 Atomic orbital electron populations 1.69968 1.06084 1.27091 1.49734 1.24978 0.94922 0.99369 0.94862 0.86527 0.79478 0.82467 0.78792 1.20067 1.21138 1.20063 1.20946 0.93169 0.90122 1.52273 0.92284 1.19173 0.94186 0.88938 0.98921 1.23691 0.96439 0.78431 1.01112 1.86569 1.41887 1.15543 1.82690 1.20844 0.85584 0.85360 0.73278 1.90807 1.15020 1.88348 1.46261 1.18928 0.93633 0.90426 1.08731 1.21382 0.93251 0.98119 0.94249 1.20442 1.00683 0.88897 1.04573 1.19226 0.89838 0.86520 1.00994 1.18575 0.88611 0.87389 1.06567 1.20431 1.01345 0.87686 0.97413 1.86353 1.36921 1.14006 1.84664 1.23643 0.94797 0.86919 1.00200 1.23683 0.92990 0.88640 1.00341 1.86287 1.38307 1.13379 1.83818 0.92657 0.95287 0.95283 0.92165 0.92151 0.82792 0.83801 0.83285 0.90341 0.85903 0.85884 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.70 5.41 37.16 0.20 1.90 16 11 O -0.35 -7.08 9.46 -40.65 -0.38 -7.46 16 12 C 0.50 9.35 7.89 34.49 0.27 9.62 16 13 O -0.51 -10.62 16.13 -19.27 -0.31 -10.93 16 14 C -0.12 -1.74 5.87 -105.01 -0.62 -2.35 16 15 C -0.05 -0.66 9.60 -39.21 -0.38 -1.04 16 16 C -0.13 -1.43 9.94 -39.48 -0.39 -1.83 16 17 C 0.08 0.93 6.51 -38.90 -0.25 0.67 16 18 C 0.03 0.41 6.48 -39.19 -0.25 0.16 16 19 C -0.05 -0.69 9.50 -39.01 -0.37 -1.06 16 20 O -0.30 -3.33 10.42 -32.98 -0.34 -3.67 16 21 C 0.02 0.13 7.26 37.40 0.27 0.40 16 22 C 0.02 0.12 7.26 37.40 0.27 0.39 16 23 O -0.30 -3.03 10.41 -32.34 -0.34 -3.37 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.15 1.90 7.60 -52.49 -0.40 1.50 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.15 2.06 7.64 -52.49 -0.40 1.66 16 32 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -32.75 310.69 -6.93 -39.68 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.15 Total: -3.58 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.81 Total: -6.16 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.38 Total: -25.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.75 -6.93 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916596583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.371 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds