Wall clock time and date at job start Tue Mar 31 2020 00:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48502 * 109.47517 * 240.00749 * 3 2 1 5 5 H 1.48498 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47017 * 120.00561 * 3 2 1 7 7 C 1.37882 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99657 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46572 * 180.02562 * 9 7 2 11 11 C 1.33790 * 124.17873 * 90.02320 * 10 9 7 12 12 O 1.21540 * 123.76693 * 359.96913 * 11 10 9 13 13 N 1.34526 * 112.45738 * 179.97438 * 11 10 9 14 14 C 1.47312 * 106.61995 * 0.02562 * 13 11 10 15 15 H 1.09006 * 110.59656 * 118.67781 * 14 13 11 16 16 C 1.50694 * 110.59677 * 241.46968 * 14 13 11 17 17 C 1.38215 * 120.01777 * 23.27641 * 16 14 13 18 18 C 1.38216 * 120.02937 * 180.27543 * 17 16 14 19 19 C 1.38267 * 120.05121 * 359.97438 * 18 17 16 20 20 C 1.38172 * 120.02673 * 0.02562 * 19 18 17 21 21 C 1.38445 * 120.01153 * 203.54624 * 16 14 13 22 22 F 1.35099 * 120.02106 * 359.70676 * 21 16 14 23 23 C 1.34772 * 124.17861 * 269.98390 * 10 9 7 24 24 O 1.21239 * 127.15355 * 0.08421 * 23 10 9 25 25 H 0.96998 * 119.99829 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47238 * 60.00858 * 9 7 2 27 27 H 1.08992 * 109.47687 * 299.99742 * 9 7 2 28 28 H 0.97003 * 126.68539 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.98427 * 0.26811 * 17 16 14 30 30 H 1.08008 * 119.97674 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.98952 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.01712 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6911 -4.1843 1.1063 12 8 2.3946 -3.8374 2.2328 13 7 3.5467 -5.1858 0.8330 14 6 3.6290 -5.2809 -0.6347 15 1 4.6480 -5.0952 -0.9745 16 6 3.1523 -6.6304 -1.1061 17 6 2.2966 -7.3758 -0.3171 18 6 1.8637 -8.6161 -0.7467 19 6 2.2856 -9.1126 -1.9662 20 6 3.1410 -8.3694 -2.7568 21 6 3.5757 -7.1267 -2.3272 22 9 4.4118 -6.3988 -3.0995 23 6 2.6947 -4.1884 -1.1155 24 8 2.4434 -3.8927 -2.2641 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 4.0181 -5.7372 1.4770 29 1 1.9661 -6.9889 0.6355 30 1 1.1946 -9.1977 -0.1296 31 1 1.9463 -10.0818 -2.3011 32 1 3.4708 -8.7575 -3.7092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916617477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:42 Heat of formation + Delta-G solvation = -57.032016 kcal Electronic energy + Delta-G solvation = -21326.019410 eV Core-core repulsion = 17781.208664 eV Total energy + Delta-G solvation = -3544.810746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.99257 -41.89755 -39.07154 -37.90608 -35.68222 -34.61352 -32.58668 -31.34555 -30.75060 -27.95269 -26.75365 -23.59004 -23.09260 -22.61713 -21.43303 -19.87286 -17.96639 -17.57373 -17.04686 -16.58887 -16.35663 -15.95088 -15.60123 -15.16848 -14.99327 -14.74967 -14.39131 -14.05405 -13.63312 -13.52251 -13.48764 -13.13792 -12.49689 -12.34735 -11.93450 -11.55555 -11.34650 -11.15445 -10.74741 -10.55159 -10.13780 -9.96382 -9.78371 -9.39023 -9.10432 -8.81843 -8.61826 -8.51601 -6.14840 -4.20314 0.84540 0.98286 2.14683 2.86016 3.30389 3.31747 3.34298 3.37342 3.55369 3.71247 4.08110 4.23592 4.38577 4.47721 4.63364 4.68294 4.97420 5.03526 5.21134 5.24697 5.54172 5.78270 5.84164 5.86845 6.06849 6.16402 6.53642 6.63364 6.98714 7.07609 7.18669 7.77579 7.88461 8.00519 8.02578 8.66805 8.82940 9.44601 10.94574 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.005013 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.811160 B = 5584.121356 C = 5950.199870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.249 3.751 10 N -0.554 5.554 11 C 0.701 3.299 12 O -0.536 6.536 13 N -0.733 5.733 14 C 0.133 3.867 15 H 0.130 0.870 16 C -0.129 4.129 17 C -0.071 4.071 18 C -0.130 4.130 19 C -0.086 4.086 20 C -0.155 4.155 21 C 0.125 3.875 22 F -0.129 7.129 23 C 0.528 3.472 24 O -0.461 6.461 25 H 0.267 0.733 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.434 0.566 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -19.247 -2.596 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.132 3.868 10 N -0.298 5.298 11 C 0.402 3.598 12 O -0.409 6.409 13 N -0.399 5.399 14 C 0.023 3.977 15 H 0.147 0.853 16 C -0.131 4.131 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.104 4.104 20 C -0.174 4.174 21 C 0.105 3.895 22 F -0.107 7.107 23 C 0.312 3.688 24 O -0.331 6.331 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.277 0.723 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.946 -18.582 -2.651 19.690 hybrid contribution 0.875 0.808 0.096 1.195 sum 6.821 -17.774 -2.554 19.209 Atomic orbital electron populations 1.69913 1.06023 1.27587 1.49357 1.24893 0.94964 0.99361 0.94465 0.86441 0.79496 0.82066 0.78804 1.20002 1.20939 1.19992 1.21209 0.93395 0.90118 1.52759 0.92198 1.19633 0.86519 0.80623 0.99981 1.46827 1.43097 1.33913 1.05995 1.15973 0.79111 0.79617 0.85106 1.90974 1.62877 1.66288 1.20722 1.45547 1.49836 1.38387 1.06117 1.20723 1.01967 0.92528 0.82486 0.85263 1.19649 1.01977 0.96190 0.95276 1.20964 0.94463 0.93842 0.99671 1.21206 1.00770 0.96015 0.96854 1.21074 0.95806 0.99654 0.93849 1.21139 1.00781 0.93703 1.01806 1.17440 0.92261 0.90584 0.89255 1.91540 1.68450 1.76861 1.73898 1.20331 0.80664 0.82081 0.85717 1.90764 1.59292 1.64913 1.18116 0.92321 0.92927 0.92677 0.72255 0.84650 0.84993 0.84854 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -15.44 9.39 -34.44 -0.32 -15.77 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.25 6.64 5.45 -5.19 -0.03 6.61 16 10 N -0.55 -12.35 2.59 -122.02 -0.32 -12.67 16 11 C 0.70 14.06 8.62 -88.02 -0.76 13.30 16 12 O -0.54 -12.58 17.48 5.33 0.09 -12.48 16 13 N -0.73 -10.41 5.01 -60.33 -0.30 -10.71 16 14 C 0.13 1.95 3.69 -69.36 -0.26 1.70 16 15 H 0.13 1.67 7.81 -51.93 -0.41 1.26 16 16 C -0.13 -1.65 5.14 -104.56 -0.54 -2.19 16 17 C -0.07 -0.80 9.35 -39.60 -0.37 -1.17 16 18 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 19 C -0.09 -0.71 10.04 -39.60 -0.40 -1.11 16 20 C -0.16 -1.51 10.03 -39.52 -0.40 -1.91 16 21 C 0.12 1.55 7.25 -39.42 -0.29 1.26 16 22 F -0.13 -1.78 16.58 2.25 0.04 -1.74 16 23 C 0.53 10.66 7.63 -10.56 -0.08 10.57 16 24 O -0.46 -10.63 17.76 5.59 0.10 -10.53 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.05 1.47 8.01 -51.93 -0.42 1.05 16 27 H 0.06 1.55 7.86 -51.93 -0.41 1.14 16 28 H 0.43 4.59 8.96 -40.82 -0.37 4.23 16 29 H 0.14 1.51 7.28 -52.49 -0.38 1.13 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -33.94 295.86 -6.93 -40.87 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.79 Total: -0.12 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -3.93 Total: 11.55 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.12 Total: -48.96 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.19 Total: -23.01 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.94 -6.93 -40.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916617477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.162 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds