Wall clock time and date at job start Tue Mar 31 2020 00:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48502 * 109.47517 * 240.00749 * 3 2 1 5 5 H 1.48498 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47017 * 120.00561 * 3 2 1 7 7 C 1.37882 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99657 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46572 * 180.02562 * 9 7 2 11 11 C 1.33790 * 124.17873 * 90.02320 * 10 9 7 12 12 O 1.21540 * 123.76693 * 359.96913 * 11 10 9 13 13 N 1.34526 * 112.45738 * 179.97438 * 11 10 9 14 14 C 1.47312 * 106.61995 * 0.02562 * 13 11 10 15 15 H 1.09006 * 110.59656 * 118.67781 * 14 13 11 16 16 C 1.50694 * 110.59677 * 241.46968 * 14 13 11 17 17 C 1.38215 * 120.01777 * 23.27641 * 16 14 13 18 18 C 1.38216 * 120.02937 * 180.27543 * 17 16 14 19 19 C 1.38267 * 120.05121 * 359.97438 * 18 17 16 20 20 C 1.38172 * 120.02673 * 0.02562 * 19 18 17 21 21 C 1.38445 * 120.01153 * 203.54624 * 16 14 13 22 22 F 1.35099 * 120.02106 * 359.70676 * 21 16 14 23 23 C 1.34772 * 124.17861 * 269.98390 * 10 9 7 24 24 O 1.21239 * 127.15355 * 0.08421 * 23 10 9 25 25 H 0.96998 * 119.99829 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47238 * 60.00858 * 9 7 2 27 27 H 1.08992 * 109.47687 * 299.99742 * 9 7 2 28 28 H 0.97003 * 126.68539 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.98427 * 0.26811 * 17 16 14 30 30 H 1.08008 * 119.97674 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.98952 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.01712 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6911 -4.1843 1.1063 12 8 2.3946 -3.8374 2.2328 13 7 3.5467 -5.1858 0.8330 14 6 3.6290 -5.2809 -0.6347 15 1 4.6480 -5.0952 -0.9745 16 6 3.1523 -6.6304 -1.1061 17 6 2.2966 -7.3758 -0.3171 18 6 1.8637 -8.6161 -0.7467 19 6 2.2856 -9.1126 -1.9662 20 6 3.1410 -8.3694 -2.7568 21 6 3.5757 -7.1267 -2.3272 22 9 4.4118 -6.3988 -3.0995 23 6 2.6947 -4.1884 -1.1155 24 8 2.4434 -3.8927 -2.2641 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 4.0181 -5.7372 1.4770 29 1 1.9661 -6.9889 0.6355 30 1 1.1946 -9.1977 -0.1296 31 1 1.9463 -10.0818 -2.3011 32 1 3.4708 -8.7575 -3.7092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916617477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:41 Heat of formation + Delta-G solvation = -80.338561 kcal Electronic energy + Delta-G solvation = -21327.030057 eV Core-core repulsion = 17781.208664 eV Total energy + Delta-G solvation = -3545.821394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.95278 -43.45715 -39.99721 -39.56583 -37.24403 -36.39759 -34.59836 -32.41062 -31.54711 -29.93756 -28.06058 -25.59074 -24.30680 -23.63956 -22.62546 -21.51098 -19.19511 -19.05181 -18.68860 -17.97945 -17.66163 -17.21268 -16.89968 -16.69621 -16.39353 -16.24665 -15.82828 -15.37839 -15.07937 -14.93012 -14.70162 -14.28870 -14.10477 -13.72551 -13.36009 -13.19494 -12.71961 -12.69969 -12.44814 -12.16618 -12.03319 -11.91648 -11.38021 -10.79381 -10.72639 -10.51837 -10.00016 -9.69978 -8.34585 -6.49734 -0.01826 0.19445 0.56299 1.32498 1.37963 1.40193 1.49067 2.01252 2.08695 2.35055 2.54045 2.97707 3.02604 3.20872 3.28061 3.68267 3.86980 4.15010 4.23428 4.34366 4.39094 4.61380 4.80178 4.92665 4.99860 5.03192 5.11634 5.30220 5.41742 5.54522 5.78841 5.81647 5.86963 6.21045 6.38090 6.55474 7.10343 7.23045 8.75238 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.005013 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.811160 B = 5584.121356 C = 5950.199870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.055 0.945 9 C 0.265 3.735 10 N -0.569 5.569 11 C 0.701 3.299 12 O -0.575 6.575 13 N -0.696 5.696 14 C 0.153 3.847 15 H 0.154 0.846 16 C -0.149 4.149 17 C -0.082 4.082 18 C -0.125 4.125 19 C -0.072 4.072 20 C -0.154 4.154 21 C 0.102 3.898 22 F -0.143 7.143 23 C 0.519 3.481 24 O -0.498 6.498 25 H 0.273 0.727 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.455 0.545 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.172 0.828 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -21.206 -2.904 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.073 0.927 9 C 0.145 3.855 10 N -0.313 5.313 11 C 0.402 3.598 12 O -0.451 6.451 13 N -0.363 5.363 14 C 0.044 3.956 15 H 0.171 0.829 16 C -0.151 4.151 17 C -0.100 4.100 18 C -0.143 4.143 19 C -0.090 4.090 20 C -0.172 4.172 21 C 0.083 3.917 22 F -0.122 7.122 23 C 0.306 3.694 24 O -0.369 6.369 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.303 0.697 29 H 0.149 0.851 30 H 0.178 0.822 31 H 0.190 0.810 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.086 -20.615 -2.956 21.999 hybrid contribution 0.471 1.270 0.147 1.362 sum 7.557 -19.345 -2.809 20.958 Atomic orbital electron populations 1.70019 1.07508 1.28860 1.49517 1.25851 0.95941 1.03124 0.93595 0.85370 0.78365 0.77459 0.79092 1.19263 1.19598 1.19289 1.21479 0.93335 0.91452 1.53546 0.92703 1.19051 0.86964 0.81903 0.97558 1.46743 1.43126 1.33569 1.07863 1.15989 0.79581 0.80348 0.83866 1.90943 1.64476 1.67793 1.21895 1.45248 1.47875 1.36484 1.06673 1.20630 1.01467 0.91802 0.81728 0.82850 1.19499 1.03970 0.95220 0.96413 1.21068 0.94464 0.94944 0.99566 1.21582 1.00236 0.95044 0.97402 1.21554 0.93950 1.00635 0.92813 1.21496 1.00353 0.92550 1.02839 1.17756 0.93028 0.91749 0.89200 1.91502 1.69018 1.77428 1.74236 1.21217 0.80747 0.82687 0.84736 1.90725 1.60678 1.66216 1.19320 0.91829 0.95286 0.95115 0.69676 0.85095 0.82185 0.81024 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.02 0.90 5.46 84.65 0.46 1.36 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.56 -33.31 9.39 25.60 0.24 -33.07 16 8 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.26 14.86 5.45 85.63 0.47 15.33 16 10 N -0.57 -26.32 2.59 -777.20 -2.01 -28.33 16 11 C 0.70 28.62 8.62 179.44 1.55 30.17 16 12 O -0.58 -27.69 17.48 -3.84 -0.07 -27.76 16 13 N -0.70 -19.17 5.01 -463.22 -2.32 -21.49 16 14 C 0.15 4.38 3.69 43.62 0.16 4.54 16 15 H 0.15 3.74 7.81 -2.38 -0.02 3.72 16 16 C -0.15 -3.63 5.14 -19.82 -0.10 -3.73 16 17 C -0.08 -1.68 9.35 22.26 0.21 -1.47 16 18 C -0.12 -1.80 10.04 22.27 0.22 -1.57 16 19 C -0.07 -0.88 10.04 22.26 0.22 -0.65 16 20 C -0.15 -2.52 10.03 22.31 0.22 -2.29 16 21 C 0.10 2.39 7.25 22.38 0.16 2.55 16 22 F -0.14 -3.84 16.58 44.97 0.75 -3.09 16 23 C 0.52 21.47 7.63 87.94 0.67 22.15 16 24 O -0.50 -23.76 17.76 -2.90 -0.05 -23.81 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.03 1.73 8.01 -2.39 -0.02 1.71 16 27 H 0.03 1.84 7.86 -2.39 -0.02 1.82 16 28 H 0.45 8.80 8.96 -92.71 -0.83 7.97 16 29 H 0.13 2.75 7.28 -2.91 -0.02 2.73 16 30 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 31 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -76.98 295.86 3.44 -73.54 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.35 Total: 5.68 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: 4.49 Total: 33.29 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.05 Total: -105.21 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.12 Total: -51.57 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.98 3.44 -73.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916617477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.799 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds