Wall clock time and date at job start Tue Mar 31 2020 00:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00384 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00332 * 3 2 1 6 6 H 1.48498 * 109.47450 * 149.99931 * 3 2 1 7 7 C 1.37876 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99924 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.33796 * 124.17859 * 269.96236 * 10 9 7 12 12 O 1.21543 * 123.76640 * 0.04253 * 11 10 9 13 13 N 1.34860 * 112.50256 * 179.97438 * 11 10 9 14 14 C 1.47309 * 106.43744 * 0.13712 * 13 11 10 15 15 H 1.09003 * 110.59535 * 241.26826 * 14 13 11 16 16 C 1.50704 * 110.60055 * 118.47938 * 14 13 11 17 17 C 1.38218 * 120.01131 * 343.83139 * 16 14 13 18 18 C 1.38221 * 120.02344 * 180.27343 * 17 16 14 19 19 C 1.38271 * 120.05304 * 359.70258 * 18 17 16 20 20 C 1.38176 * 120.02452 * 359.97438 * 19 18 17 21 21 C 1.38442 * 120.01251 * 163.52936 * 16 14 13 22 22 F 1.35104 * 120.02527 * 0.02562 * 21 16 14 23 23 C 1.34762 * 124.18090 * 90.00475 * 10 9 7 24 24 O 1.21240 * 127.15682 * 359.97438 * 23 10 9 25 25 H 0.97001 * 120.00533 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47035 * 60.00507 * 9 7 2 27 27 H 1.09000 * 109.47194 * 300.00704 * 9 7 2 28 28 H 0.97003 * 126.86929 * 180.13406 * 13 11 10 29 29 H 1.07994 * 119.98824 * 359.97438 * 17 16 14 30 30 H 1.08001 * 119.97703 * 179.71940 * 18 17 16 31 31 H 1.08001 * 119.98943 * 180.02562 * 19 18 17 32 32 H 1.07995 * 120.01616 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6910 -4.1844 -1.1074 12 8 2.3944 -3.8375 -2.2339 13 7 3.5499 -5.1877 -0.8345 14 6 3.6278 -5.2819 0.6335 15 1 4.6457 -5.0956 0.9762 16 6 3.1502 -6.6315 1.1043 17 6 2.4186 -7.4407 0.2556 18 6 1.9757 -8.6762 0.6890 19 6 2.2690 -9.1067 1.9698 20 6 3.0060 -8.3023 2.8178 21 6 3.4495 -7.0639 2.3850 22 9 4.1694 -6.2761 3.2136 23 6 2.6951 -4.1881 1.1143 24 8 2.4432 -3.8930 2.2630 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 4.0235 -5.7393 -1.4767 29 1 2.1889 -7.1055 -0.7450 30 1 1.4002 -9.3059 0.0267 31 1 1.9227 -10.0724 2.3073 32 1 3.2354 -8.6389 3.8180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916617478.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:45 Heat of formation + Delta-G solvation = -56.603842 kcal Electronic energy + Delta-G solvation = -21346.108710 eV Core-core repulsion = 17801.316531 eV Total energy + Delta-G solvation = -3544.792179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.94590 -41.87263 -39.06460 -37.89886 -35.67821 -34.61483 -32.59199 -31.31822 -30.74456 -27.95843 -26.74277 -23.58878 -23.08415 -22.60667 -21.42418 -19.86189 -17.94646 -17.56732 -17.03220 -16.54818 -16.35520 -15.99280 -15.55939 -15.16346 -14.99419 -14.72247 -14.37625 -14.04530 -13.64630 -13.52777 -13.48111 -13.11215 -12.47260 -12.35381 -11.93912 -11.55640 -11.32786 -11.14402 -10.76293 -10.54366 -10.12130 -9.95348 -9.79234 -9.37924 -9.10241 -8.79993 -8.61497 -8.52015 -6.15019 -4.20429 0.85823 0.99143 2.15105 2.85184 3.29584 3.30056 3.34773 3.38693 3.56946 3.71191 4.10051 4.24524 4.38343 4.46162 4.64633 4.69569 4.98848 5.04161 5.21092 5.24962 5.54758 5.77791 5.84888 5.88128 6.07465 6.16899 6.53743 6.64472 6.98585 7.07592 7.18777 7.77661 7.88376 8.00515 8.02823 8.66644 8.83058 9.44588 10.94443 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.005057 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.416857 B = 5535.360099 C = 5942.793228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.249 3.751 10 N -0.554 5.554 11 C 0.701 3.299 12 O -0.535 6.535 13 N -0.735 5.735 14 C 0.133 3.867 15 H 0.130 0.870 16 C -0.130 4.130 17 C -0.072 4.072 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.156 4.156 21 C 0.125 3.875 22 F -0.127 7.127 23 C 0.527 3.473 24 O -0.460 6.460 25 H 0.267 0.733 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.434 0.566 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -19.249 2.570 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.298 5.298 11 C 0.402 3.598 12 O -0.408 6.408 13 N -0.401 5.401 14 C 0.023 3.977 15 H 0.147 0.853 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.149 4.149 19 C -0.104 4.104 20 C -0.174 4.174 21 C 0.105 3.895 22 F -0.106 7.106 23 C 0.312 3.688 24 O -0.329 6.329 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.278 0.722 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.052 -18.583 2.631 19.720 hybrid contribution 0.840 0.817 -0.095 1.175 sum 6.892 -17.766 2.536 19.224 Atomic orbital electron populations 1.69917 1.06029 1.27481 1.49444 1.24892 0.94960 0.99374 0.94478 0.86380 0.79718 0.82415 0.78273 1.20342 1.20889 1.19751 1.21245 0.93432 0.90102 1.52630 0.92144 1.19638 0.86523 0.80635 0.99992 1.46814 1.43068 1.33907 1.05991 1.16051 0.79057 0.79569 0.85093 1.90972 1.62834 1.66242 1.20747 1.45605 1.49835 1.38525 1.06090 1.20708 1.01923 0.92530 0.82517 0.85290 1.19668 1.03290 0.96155 0.94080 1.20965 0.94864 0.93364 0.99882 1.21203 1.00819 0.96412 0.96489 1.21074 0.96470 0.99488 0.93403 1.21145 1.01297 0.93429 1.01574 1.17448 0.94636 0.89701 0.87710 1.91556 1.74809 1.73424 1.70762 1.20333 0.80666 0.82110 0.85726 1.90768 1.59190 1.64913 1.18071 0.92373 0.92674 0.92922 0.72224 0.84573 0.85024 0.84880 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -15.43 9.39 -34.44 -0.32 -15.75 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 6.65 5.45 -5.19 -0.03 6.62 16 10 N -0.55 -12.37 2.59 -121.92 -0.32 -12.69 16 11 C 0.70 14.08 8.63 -87.72 -0.76 13.33 16 12 O -0.54 -12.56 17.48 5.33 0.09 -12.47 16 13 N -0.73 -10.39 4.88 -60.24 -0.29 -10.68 16 14 C 0.13 1.95 3.61 -69.36 -0.25 1.70 16 15 H 0.13 1.65 8.01 -51.93 -0.42 1.23 16 16 C -0.13 -1.67 5.17 -104.55 -0.54 -2.21 16 17 C -0.07 -0.80 9.36 -39.60 -0.37 -1.17 16 18 C -0.13 -1.17 10.04 -39.58 -0.40 -1.56 16 19 C -0.09 -0.72 10.04 -39.59 -0.40 -1.12 16 20 C -0.16 -1.54 10.03 -39.51 -0.40 -1.94 16 21 C 0.12 1.58 7.25 -39.42 -0.29 1.30 16 22 F -0.13 -1.81 16.71 2.25 0.04 -1.77 16 23 C 0.53 10.66 7.63 -10.56 -0.08 10.58 16 24 O -0.46 -10.58 17.76 5.59 0.10 -10.49 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.06 1.55 7.86 -51.93 -0.41 1.14 16 27 H 0.05 1.47 8.00 -51.93 -0.42 1.06 16 28 H 0.43 4.53 8.96 -40.82 -0.37 4.17 16 29 H 0.14 1.45 7.12 -52.49 -0.37 1.08 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -34.04 295.87 -6.92 -40.96 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -2.79 Total: -0.27 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -3.93 Total: 11.58 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.13 Total: -48.97 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.19 Total: -22.95 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.04 -6.92 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916617478.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.643 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds