Wall clock time and date at job start Tue Mar 31 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21279 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99595 * 179.97438 * 12 11 9 15 15 C 1.50703 * 109.47111 * 180.02562 * 14 12 11 16 16 N 1.33234 * 125.52531 * 89.99584 * 15 14 12 17 17 C 1.30829 * 109.83202 * 180.02562 * 16 15 14 18 18 N 1.34435 * 108.07703 * 0.02562 * 17 16 15 19 19 H 0.96997 * 126.82652 * 180.02562 * 18 17 16 20 20 N 1.30713 * 125.52797 * 269.70279 * 15 14 12 21 21 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 27 27 H 1.08995 * 109.47505 * 300.00436 * 14 12 11 28 28 H 1.09008 * 109.46969 * 60.00417 * 14 12 11 29 29 H 1.07998 * 125.96604 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7194 -4.9700 0.9374 14 6 2.8163 -5.9577 0.4933 15 6 2.1640 -7.1765 1.0934 16 7 1.4803 -8.1000 0.4188 17 6 1.0484 -9.0213 1.2411 18 7 1.4551 -8.6977 2.4810 19 1 1.2849 -9.1941 3.2967 20 7 2.1816 -7.5020 2.3592 21 6 0.3720 -2.5805 -1.2490 22 9 1.1766 -2.5066 -2.3910 23 9 -0.5372 -1.5172 -1.2495 24 9 -0.3271 -3.7923 -1.2492 25 1 -0.4850 0.8400 -0.0004 26 1 3.0970 -3.4864 -0.3545 27 1 3.1201 -6.1756 -0.5305 28 1 3.6926 -5.6870 1.0825 29 1 0.4659 -9.8898 0.9713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801909.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:59 Heat of formation + Delta-G solvation = -86.169197 kcal Electronic energy + Delta-G solvation = -22118.812741 eV Core-core repulsion = 18050.801733 eV Total energy + Delta-G solvation = -4068.011008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.30169 -45.95214 -45.57226 -42.04172 -38.88018 -34.68102 -33.18784 -32.55060 -31.61777 -29.53680 -27.60532 -24.53884 -22.85171 -21.97108 -20.54944 -19.63838 -18.35481 -17.49268 -16.81129 -16.61514 -16.43836 -15.80747 -15.42135 -15.06090 -14.82556 -14.22906 -14.07567 -13.16679 -13.01533 -12.86480 -12.46428 -12.34904 -12.24479 -12.10483 -11.95656 -11.86825 -11.76326 -11.14192 -10.87738 -10.74237 -10.38954 -10.11597 -9.98837 -9.74098 -9.63668 -9.15591 -8.71359 -8.24787 -6.21923 -4.45989 1.64661 2.66781 2.89820 3.19377 3.23219 3.26777 3.28840 3.86093 4.17317 4.26368 4.60232 4.68410 4.93750 4.95456 5.36369 5.50094 5.62087 5.88488 5.91447 6.22584 6.26381 6.42128 6.96031 7.02629 7.18618 7.48724 7.64675 8.12161 8.32196 8.51496 8.89503 9.21775 10.69713 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.005117 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.262117 B = 5470.988229 C = 5869.096069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.246 3.754 10 H 0.085 0.915 11 N -0.710 5.710 12 C 0.514 3.486 13 O -0.527 6.527 14 C -0.051 4.051 15 C 0.257 3.743 16 N -0.532 5.532 17 C 0.259 3.741 18 N -0.487 5.487 19 H 0.439 0.561 20 N -0.306 5.306 21 C 0.417 3.583 22 F -0.209 7.209 23 F -0.137 7.137 24 F -0.216 7.216 25 H 0.268 0.732 26 H 0.400 0.600 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -13.112 1.714 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.102 0.898 11 N -0.361 5.361 12 C 0.297 3.703 13 O -0.403 6.403 14 C -0.094 4.094 15 C -0.026 4.026 16 N -0.260 5.260 17 C -0.041 4.041 18 N -0.205 5.205 19 H 0.284 0.716 20 N -0.135 5.135 21 C 0.360 3.640 22 F -0.191 7.191 23 F -0.119 7.119 24 F -0.198 7.198 25 H 0.079 0.921 26 H 0.234 0.766 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.199 -12.631 2.172 13.487 hybrid contribution 0.249 0.293 -0.001 0.385 sum 4.448 -12.337 2.171 13.293 Atomic orbital electron populations 1.70407 1.05877 1.27345 1.43675 1.25093 0.95151 1.00143 0.94062 0.86208 0.79536 0.81642 0.78421 1.20208 1.20853 1.19464 1.20882 0.93813 0.88074 1.56108 0.90352 1.19717 0.88755 0.85788 0.91728 0.89784 1.45988 1.17294 1.10387 1.62383 1.20105 0.88250 0.83519 0.78425 1.90725 1.21160 1.82774 1.45653 1.19949 0.98074 0.87936 1.03440 1.23354 0.96036 0.95805 0.87431 1.70361 1.16882 1.04127 1.34641 1.26034 0.97519 0.99247 0.81261 1.48062 1.42098 1.19963 1.10382 0.71554 1.77979 1.17825 0.98486 1.19190 1.23115 0.80890 0.72828 0.87128 1.92988 1.74385 1.96191 1.55532 1.93401 1.68420 1.53833 1.96208 1.93080 1.81486 1.48302 1.96967 0.92138 0.76605 0.86232 0.86609 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.20 9.50 55.43 0.53 -22.67 15 2 C 0.06 1.68 5.20 -17.82 -0.09 1.58 15 3 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 15 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 15 8 H 0.08 1.86 7.74 -52.49 -0.41 1.46 15 9 C 0.25 6.15 2.21 -69.09 -0.15 5.99 15 10 H 0.08 2.37 7.58 -51.93 -0.39 1.98 15 11 N -0.71 -14.39 4.98 -54.93 -0.27 -14.67 15 12 C 0.51 10.28 7.36 -10.98 -0.08 10.20 15 13 O -0.53 -12.91 14.61 5.56 0.08 -12.82 15 14 C -0.05 -0.76 6.33 -29.03 -0.18 -0.95 15 15 C 0.26 4.21 6.63 -156.86 -1.04 3.17 15 16 N -0.53 -8.33 11.19 -11.98 -0.13 -8.46 15 17 C 0.26 2.82 13.13 -90.65 -1.19 1.63 15 18 N -0.49 -5.35 7.45 29.53 0.22 -5.13 15 19 H 0.44 2.90 8.96 -182.34 -1.63 1.27 15 20 N -0.31 -4.79 12.80 32.42 0.41 -4.38 15 21 C 0.42 10.85 2.81 37.16 0.10 10.95 15 22 F -0.21 -5.20 16.94 2.25 0.04 -5.16 15 23 F -0.14 -3.86 12.91 2.25 0.03 -3.83 15 24 F -0.22 -5.67 15.67 2.25 0.04 -5.63 15 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 26 H 0.40 6.73 8.54 -40.82 -0.35 6.38 15 27 H 0.12 1.48 8.14 -51.93 -0.42 1.06 15 28 H 0.12 1.37 8.14 -51.92 -0.42 0.95 15 29 H 0.22 1.14 8.06 -52.49 -0.42 0.71 15 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -35.57 274.51 -6.06 -41.63 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.19 Total: 3.66 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: -2.93 Total: 18.24 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.75 Total: -55.31 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.57 -6.06 -41.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801909.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.537 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds