Wall clock time and date at job start Tue Mar 31 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21279 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99595 * 179.97438 * 12 11 9 15 15 C 1.50703 * 109.47111 * 180.02562 * 14 12 11 16 16 N 1.33234 * 125.52531 * 89.99584 * 15 14 12 17 17 C 1.30829 * 109.83202 * 180.02562 * 16 15 14 18 18 N 1.34435 * 108.07703 * 0.02562 * 17 16 15 19 19 H 0.96997 * 126.82652 * 180.02562 * 18 17 16 20 20 N 1.30713 * 125.52797 * 269.70279 * 15 14 12 21 21 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 27 27 H 1.08995 * 109.47505 * 300.00436 * 14 12 11 28 28 H 1.09008 * 109.46969 * 60.00417 * 14 12 11 29 29 H 1.07998 * 125.96604 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7194 -4.9700 0.9374 14 6 2.8163 -5.9577 0.4933 15 6 2.1640 -7.1765 1.0934 16 7 1.4803 -8.1000 0.4188 17 6 1.0484 -9.0213 1.2411 18 7 1.4551 -8.6977 2.4810 19 1 1.2849 -9.1941 3.2967 20 7 2.1816 -7.5020 2.3592 21 6 0.3720 -2.5805 -1.2490 22 9 1.1766 -2.5066 -2.3910 23 9 -0.5372 -1.5172 -1.2495 24 9 -0.3271 -3.7923 -1.2492 25 1 -0.4850 0.8400 -0.0004 26 1 3.0970 -3.4864 -0.3545 27 1 3.1201 -6.1756 -0.5305 28 1 3.6926 -5.6870 1.0825 29 1 0.4659 -9.8898 0.9713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801909.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:59 Heat of formation + Delta-G solvation = -112.706624 kcal Electronic energy + Delta-G solvation = -22119.963490 eV Core-core repulsion = 18050.801733 eV Total energy + Delta-G solvation = -4069.161757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.39966 -48.03155 -47.71447 -43.04000 -40.51466 -36.51515 -34.50965 -34.21695 -32.68920 -31.03273 -29.16469 -26.56875 -24.01699 -23.52907 -22.07377 -21.08673 -19.44652 -19.15754 -18.84134 -18.65263 -18.22424 -17.54601 -16.87474 -16.45875 -16.21163 -15.73229 -15.51611 -14.96359 -14.88119 -14.46521 -14.41328 -14.29079 -14.26266 -14.00266 -13.85102 -13.23303 -13.07828 -12.92986 -12.70493 -12.61925 -12.19346 -11.55735 -11.21417 -11.05308 -10.93178 -10.68047 -10.56962 -10.05552 -8.19855 -6.50751 0.67047 1.48244 1.48916 1.60395 1.66224 1.75042 1.89160 2.32740 2.46312 2.58769 2.95643 3.20536 3.70488 3.74458 3.85211 3.96293 4.17378 4.27336 4.47318 4.60342 4.92352 5.27617 5.35402 5.42584 5.56786 5.66347 6.30875 6.54551 6.72511 7.13545 7.18418 7.37295 8.73012 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.005117 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.262117 B = 5470.988229 C = 5869.096069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.560 4.560 8 H 0.097 0.903 9 C 0.252 3.748 10 H 0.044 0.956 11 N -0.702 5.702 12 C 0.510 3.490 13 O -0.577 6.577 14 C -0.041 4.041 15 C 0.235 3.765 16 N -0.577 5.577 17 C 0.274 3.726 18 N -0.475 5.475 19 H 0.458 0.542 20 N -0.339 5.339 21 C 0.413 3.587 22 F -0.201 7.201 23 F -0.152 7.152 24 F -0.220 7.220 25 H 0.268 0.732 26 H 0.418 0.582 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -13.941 1.659 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.597 4.597 8 H 0.115 0.885 9 C 0.145 3.855 10 H 0.061 0.939 11 N -0.354 5.354 12 C 0.297 3.703 13 O -0.456 6.456 14 C -0.083 4.083 15 C -0.049 4.049 16 N -0.306 5.306 17 C -0.024 4.024 18 N -0.195 5.195 19 H 0.307 0.693 20 N -0.169 5.169 21 C 0.357 3.643 22 F -0.183 7.183 23 F -0.133 7.133 24 F -0.202 7.202 25 H 0.078 0.922 26 H 0.256 0.744 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 5.894 -13.502 2.134 14.886 hybrid contribution -0.336 0.419 0.045 0.539 sum 5.558 -13.083 2.179 14.381 Atomic orbital electron populations 1.70545 1.07589 1.28107 1.44847 1.26037 0.95885 1.03821 0.93492 0.85142 0.78627 0.77012 0.78444 1.19923 1.21036 1.17841 1.21262 0.94707 0.88172 1.55514 0.88547 1.19299 0.88996 0.87640 0.89584 0.93859 1.45831 1.17350 1.09625 1.62554 1.21011 0.88467 0.84157 0.76707 1.90695 1.23687 1.83576 1.47633 1.19974 0.97157 0.85412 1.05713 1.23568 0.96911 0.96534 0.87859 1.70332 1.18385 1.05446 1.36420 1.27023 0.95836 0.99240 0.80341 1.47987 1.41068 1.18811 1.11592 0.69338 1.77851 1.19289 1.00512 1.19256 1.23313 0.80853 0.72308 0.87838 1.92988 1.74039 1.96142 1.55143 1.93372 1.69038 1.54572 1.96331 1.93069 1.81668 1.48433 1.97025 0.92249 0.74444 0.83605 0.83465 0.71026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.19 9.50 21.45 0.20 -48.99 15 2 C 0.01 0.66 5.20 84.65 0.44 1.10 15 3 Si 0.98 40.57 29.54 68.60 2.03 42.60 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 15 7 C -0.56 -28.20 8.46 25.60 0.22 -27.99 15 8 H 0.10 4.40 7.74 -2.91 -0.02 4.37 15 9 C 0.25 12.77 2.21 44.24 0.10 12.87 15 10 H 0.04 2.56 7.58 -2.39 -0.02 2.54 15 11 N -0.70 -28.06 4.98 -446.10 -2.22 -30.29 15 12 C 0.51 20.29 7.36 87.66 0.64 20.93 15 13 O -0.58 -28.81 14.61 -3.03 -0.04 -28.86 15 14 C -0.04 -1.15 6.33 29.10 0.18 -0.97 15 15 C 0.23 7.43 6.63 138.63 0.92 8.35 15 16 N -0.58 -17.19 11.19 -191.80 -2.15 -19.33 15 17 C 0.27 5.28 13.13 180.36 2.37 7.64 15 18 N -0.47 -9.50 7.45 -60.49 -0.45 -9.95 15 19 H 0.46 5.04 8.96 -213.10 -1.91 3.13 15 20 N -0.34 -10.25 12.80 -51.34 -0.66 -10.91 15 21 C 0.41 21.79 2.81 71.98 0.20 21.99 15 22 F -0.20 -9.92 16.94 44.97 0.76 -9.16 15 23 F -0.15 -8.73 12.91 44.97 0.58 -8.15 15 24 F -0.22 -11.73 15.67 44.97 0.70 -11.03 15 25 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 26 H 0.42 13.36 8.54 -92.71 -0.79 12.57 15 27 H 0.15 3.28 8.14 -2.39 -0.02 3.26 15 28 H 0.15 3.14 8.14 -2.38 -0.02 3.12 15 29 H 0.27 1.70 8.06 -2.91 -0.02 1.68 15 Total: -1.00 -78.87 274.51 2.38 -76.49 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -1.45 Total: 13.65 kcal Atomic # 6 Polarization: 38.85 SS G_CDS: 5.07 Total: 43.93 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -5.27 Total: -119.47 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.86 kcal Atomic # 9 Polarization: -30.39 SS G_CDS: 2.05 Total: -28.34 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -78.87 2.38 -76.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801909.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.213 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds