Wall clock time and date at job start Tue Mar 31 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28521 * 124.44163 * 2 1 4 4 C 1.31127 * 109.06116 * 179.97438 * 3 2 1 5 5 C 1.40928 * 105.77196 * 359.97438 * 4 3 2 6 6 C 1.47803 * 127.23122 * 180.02562 * 5 4 3 7 7 O 1.21558 * 120.00574 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99764 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00476 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46643 * 35.00571 * 9 8 6 11 11 C 1.50694 * 109.47517 * 155.00039 * 9 8 6 12 12 H 1.08002 * 120.00179 * 0.02562 * 11 9 8 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.52999 * 109.47436 * 275.00648 * 9 8 6 20 20 F 1.39898 * 109.46621 * 299.99463 * 19 9 8 21 21 F 1.39899 * 109.47312 * 59.99166 * 19 9 8 22 22 F 1.39896 * 109.47210 * 179.97438 * 19 9 8 23 23 N 1.28588 * 124.44475 * 180.28486 * 2 1 3 24 24 H 1.08994 * 109.47152 * 90.02887 * 1 2 3 25 25 H 1.09002 * 109.46952 * 210.03033 * 1 2 3 26 26 H 1.09004 * 109.47489 * 330.02196 * 1 2 3 27 27 H 1.07995 * 127.11421 * 179.97438 * 4 3 2 28 28 H 0.97008 * 120.00285 * 359.97438 * 8 6 5 29 29 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0006 5 6 3.4658 -0.6971 0.0015 6 6 4.6487 -1.5833 0.0029 7 8 5.7664 -1.1053 0.0029 8 7 4.4881 -2.9215 0.0043 9 6 5.6605 -3.8000 0.0051 10 1 6.4560 -3.3436 0.5942 11 6 5.2904 -5.1311 0.6069 12 1 4.2825 -5.3055 0.9536 13 6 6.2384 -6.1264 0.7148 14 7 7.4655 -5.9142 0.2921 15 14 5.7798 -7.7762 1.4613 16 1 6.0129 -7.7381 2.9274 17 1 4.3464 -8.0586 1.1952 18 1 6.6155 -8.8434 0.8548 19 6 6.1441 -4.0065 -1.4316 20 9 5.1231 -4.5923 -2.1876 21 9 6.4877 -2.7708 -1.9903 22 9 7.2640 -4.8450 -1.4307 23 7 2.1923 -1.0604 -0.0053 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8897 0.5143 26 1 -0.3634 0.8902 0.5135 27 1 4.3129 1.3696 0.0003 28 1 3.5962 -3.3030 0.0047 29 1 8.1326 -6.6144 0.3683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928802892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:08 Heat of formation + Delta-G solvation = -58.556045 kcal Electronic energy + Delta-G solvation = -22192.711263 eV Core-core repulsion = 18125.897651 eV Total energy + Delta-G solvation = -4066.813612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.34857 -46.00148 -45.61232 -43.56168 -38.81590 -34.74221 -33.78803 -32.87513 -32.28315 -28.86362 -27.66794 -24.63550 -23.94306 -22.01621 -21.42180 -19.88619 -18.06622 -17.18404 -16.97445 -16.79362 -16.64229 -16.45525 -15.64135 -14.96271 -14.76308 -14.36962 -13.98951 -13.29892 -13.10546 -13.04326 -12.91500 -12.53949 -12.39893 -12.27946 -11.98553 -11.84399 -11.81546 -11.19117 -10.96532 -10.85147 -10.84138 -10.43405 -10.36684 -9.68996 -9.61111 -9.35731 -8.73223 -8.31610 -6.24446 -4.48246 1.47649 2.05334 2.17301 3.18883 3.25307 3.28382 3.61289 3.69531 4.04249 4.21552 4.56293 4.78378 4.83659 4.92630 5.04067 5.06136 5.33537 5.74362 5.82523 5.86366 6.06339 6.20492 6.53207 6.88700 7.09782 7.44761 7.61991 8.09198 8.31509 8.48215 8.75872 9.19268 10.67317 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.005720 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.352653 B = 4894.141797 C = 5484.017636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.151 5.151 3 N -0.297 5.297 4 C 0.033 3.967 5 C -0.033 4.033 6 C 0.598 3.402 7 O -0.522 6.522 8 N -0.694 5.694 9 C 0.244 3.756 10 H 0.089 0.911 11 C -0.552 4.552 12 H 0.079 0.921 13 C 0.065 3.935 14 N -0.839 5.839 15 Si 0.916 3.084 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.282 1.282 19 C 0.417 3.583 20 F -0.208 7.208 21 F -0.217 7.217 22 F -0.135 7.135 23 N -0.251 5.251 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.208 0.792 28 H 0.405 0.595 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 7.868 -0.197 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.053 5.053 3 N -0.137 5.137 4 C -0.151 4.151 5 C -0.196 4.196 6 C 0.379 3.621 7 O -0.396 6.396 8 N -0.343 5.343 9 C 0.139 3.861 10 H 0.107 0.893 11 C -0.589 4.589 12 H 0.097 0.903 13 C -0.144 4.144 14 N -0.472 5.472 15 Si 0.743 3.257 16 H -0.202 1.202 17 H -0.195 1.195 18 H -0.208 1.208 19 C 0.361 3.639 20 F -0.190 7.190 21 F -0.199 7.199 22 F -0.117 7.117 23 N -0.099 5.099 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.225 0.775 28 H 0.240 0.760 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.691 8.093 -0.255 14.221 hybrid contribution 0.301 -1.042 -0.041 1.085 sum -11.390 7.051 -0.296 13.399 Atomic orbital electron populations 1.22184 0.70029 1.06019 1.05128 1.48007 1.09084 0.99382 1.48864 1.73956 1.03947 1.15590 1.20211 1.24836 0.94126 0.93864 1.02272 1.23332 0.91390 0.94940 1.09958 1.16737 0.85817 0.82110 0.77391 1.90815 1.23454 1.75289 1.50067 1.45952 1.11452 1.04583 1.72276 1.19827 0.86398 0.91863 0.88061 0.89339 1.20870 0.98462 0.95777 1.43757 0.90330 1.25079 0.94881 0.99755 0.94657 1.70399 1.02478 1.34245 1.40113 0.86191 0.78753 0.81657 0.79122 1.20180 1.19490 1.20786 1.23098 0.76464 0.72979 0.91377 1.92994 1.61321 1.85124 1.79573 1.93072 1.92823 1.45690 1.88328 1.93408 1.51991 1.70124 1.96128 1.74424 1.03242 1.15386 1.16838 0.89068 0.87658 0.87809 0.77517 0.75963 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.72 11.55 59.85 0.69 1.41 15 2 N -0.15 -1.94 4.35 -16.63 -0.07 -2.01 15 3 N -0.30 -4.12 12.01 30.90 0.37 -3.75 15 4 C 0.03 0.49 12.04 -16.84 -0.20 0.28 15 5 C -0.03 -0.57 7.21 -82.68 -0.60 -1.16 15 6 C 0.60 12.39 7.36 -12.35 -0.09 12.29 15 7 O -0.52 -12.17 15.53 5.32 0.08 -12.08 15 8 N -0.69 -14.84 4.98 -55.89 -0.28 -15.12 15 9 C 0.24 6.09 2.21 -69.09 -0.15 5.94 15 10 H 0.09 2.42 7.58 -51.93 -0.39 2.03 15 11 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 15 12 H 0.08 1.91 7.74 -52.49 -0.41 1.50 15 13 C 0.07 1.69 5.20 -17.82 -0.09 1.60 15 14 N -0.84 -22.85 9.50 55.43 0.53 -22.32 15 15 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 19 C 0.42 10.75 2.81 37.16 0.10 10.85 15 20 F -0.21 -5.20 16.94 2.25 0.04 -5.16 15 21 F -0.22 -5.53 15.68 2.25 0.04 -5.49 15 22 F -0.14 -3.74 12.91 2.25 0.03 -3.71 15 23 N -0.25 -3.91 11.84 33.42 0.40 -3.51 15 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 25 H 0.10 0.56 8.14 -51.93 -0.42 0.13 15 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 15 27 H 0.21 2.58 8.06 -52.49 -0.42 2.16 15 28 H 0.41 7.91 8.31 -40.82 -0.34 7.57 15 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 LS Contribution 275.85 15.07 4.16 4.16 Total: -1.00 -31.48 275.85 -2.33 -33.82 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -1.96 Total: 3.36 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: -0.63 Total: 16.82 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.94 Total: -46.72 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 0.10 Total: -14.36 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.48 -2.33 -33.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928802892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.741 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds