Wall clock time and date at job start Tue Mar 31 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28521 * 124.44163 * 2 1 4 4 C 1.31127 * 109.06116 * 179.97438 * 3 2 1 5 5 C 1.40928 * 105.77196 * 359.97438 * 4 3 2 6 6 C 1.47803 * 127.23122 * 180.02562 * 5 4 3 7 7 O 1.21558 * 120.00574 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99764 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00476 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46643 * 35.00571 * 9 8 6 11 11 C 1.50694 * 109.47517 * 155.00039 * 9 8 6 12 12 H 1.08002 * 120.00179 * 0.02562 * 11 9 8 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.52999 * 109.47436 * 275.00648 * 9 8 6 20 20 F 1.39898 * 109.46621 * 299.99463 * 19 9 8 21 21 F 1.39899 * 109.47312 * 59.99166 * 19 9 8 22 22 F 1.39896 * 109.47210 * 179.97438 * 19 9 8 23 23 N 1.28588 * 124.44475 * 180.28486 * 2 1 3 24 24 H 1.08994 * 109.47152 * 90.02887 * 1 2 3 25 25 H 1.09002 * 109.46952 * 210.03033 * 1 2 3 26 26 H 1.09004 * 109.47489 * 330.02196 * 1 2 3 27 27 H 1.07995 * 127.11421 * 179.97438 * 4 3 2 28 28 H 0.97008 * 120.00285 * 359.97438 * 8 6 5 29 29 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0006 5 6 3.4658 -0.6971 0.0015 6 6 4.6487 -1.5833 0.0029 7 8 5.7664 -1.1053 0.0029 8 7 4.4881 -2.9215 0.0043 9 6 5.6605 -3.8000 0.0051 10 1 6.4560 -3.3436 0.5942 11 6 5.2904 -5.1311 0.6069 12 1 4.2825 -5.3055 0.9536 13 6 6.2384 -6.1264 0.7148 14 7 7.4655 -5.9142 0.2921 15 14 5.7798 -7.7762 1.4613 16 1 6.0129 -7.7381 2.9274 17 1 4.3464 -8.0586 1.1952 18 1 6.6155 -8.8434 0.8548 19 6 6.1441 -4.0065 -1.4316 20 9 5.1231 -4.5923 -2.1876 21 9 6.4877 -2.7708 -1.9903 22 9 7.2640 -4.8450 -1.4307 23 7 2.1923 -1.0604 -0.0053 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8897 0.5143 26 1 -0.3634 0.8902 0.5135 27 1 4.3129 1.3696 0.0003 28 1 3.5962 -3.3030 0.0047 29 1 8.1326 -6.6144 0.3683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928802892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:08 Heat of formation + Delta-G solvation = -81.997217 kcal Electronic energy + Delta-G solvation = -22193.727748 eV Core-core repulsion = 18125.897651 eV Total energy + Delta-G solvation = -4067.830097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.42576 -48.06123 -47.72958 -44.69661 -40.50283 -36.58624 -34.84258 -34.51362 -33.67710 -30.57276 -28.75078 -26.62283 -25.37128 -23.27803 -23.03973 -21.54224 -19.67441 -18.91700 -18.70860 -18.63519 -18.03589 -17.93258 -17.46371 -16.84608 -16.15997 -15.73863 -15.56411 -15.02962 -14.97383 -14.55326 -14.46423 -14.29582 -14.03612 -13.89578 -13.82728 -13.61945 -13.18356 -12.95282 -12.78488 -12.60817 -12.23481 -12.12614 -11.60919 -11.53332 -11.31001 -10.68464 -10.49410 -10.12433 -8.21465 -6.52373 0.19656 0.86726 1.27948 1.47806 1.48987 1.60419 2.04301 2.13981 2.39173 2.53393 2.87345 2.93989 3.67869 3.79596 3.85151 4.00126 4.18966 4.32939 4.34386 4.48294 4.68194 4.85425 4.94918 5.29491 5.51048 5.55030 5.63499 6.49853 6.54522 7.01943 7.09981 7.21828 8.71423 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.005720 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.352653 B = 4894.141797 C = 5484.017636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.132 5.132 3 N -0.293 5.293 4 C 0.032 3.968 5 C -0.064 4.064 6 C 0.599 3.401 7 O -0.556 6.556 8 N -0.691 5.691 9 C 0.250 3.750 10 H 0.057 0.943 11 C -0.563 4.563 12 H 0.090 0.910 13 C 0.017 3.983 14 N -0.872 5.872 15 Si 0.984 3.016 16 H -0.269 1.269 17 H -0.260 1.260 18 H -0.283 1.283 19 C 0.414 3.586 20 F -0.203 7.203 21 F -0.218 7.218 22 F -0.148 7.148 23 N -0.253 5.253 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.129 0.871 27 H 0.224 0.776 28 H 0.415 0.585 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 7.903 0.203 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.037 5.037 3 N -0.134 5.134 4 C -0.150 4.150 5 C -0.225 4.225 6 C 0.383 3.617 7 O -0.432 6.432 8 N -0.341 5.341 9 C 0.144 3.856 10 H 0.075 0.925 11 C -0.599 4.599 12 H 0.108 0.892 13 C -0.189 4.189 14 N -0.506 5.506 15 Si 0.807 3.193 16 H -0.195 1.195 17 H -0.184 1.184 18 H -0.209 1.209 19 C 0.358 3.642 20 F -0.185 7.185 21 F -0.200 7.200 22 F -0.129 7.129 23 N -0.103 5.103 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.240 0.760 28 H 0.251 0.749 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.137 8.149 0.144 16.318 hybrid contribution 0.911 -0.959 -0.193 1.337 sum -13.226 7.190 -0.049 15.054 Atomic orbital electron populations 1.22837 0.66584 1.08251 1.07300 1.48694 1.10772 0.98455 1.45820 1.73994 1.03481 1.15701 1.20227 1.25118 0.95168 0.93061 1.01673 1.22770 0.90967 0.95235 1.13488 1.17096 0.86587 0.81931 0.76060 1.90783 1.25215 1.75780 1.51418 1.45799 1.10804 1.04767 1.72716 1.19470 0.86808 0.92306 0.87041 0.92504 1.21183 0.99068 0.95955 1.43733 0.89176 1.25978 0.94683 1.03354 0.94840 1.70519 1.03505 1.35352 1.41224 0.85148 0.78791 0.76978 0.78362 1.19460 1.18389 1.20877 1.23247 0.76236 0.72786 0.91942 1.92990 1.60990 1.85057 1.79482 1.93064 1.92853 1.45667 1.88379 1.93382 1.52720 1.70547 1.96230 1.74368 1.02768 1.16451 1.16726 0.86857 0.85910 0.85241 0.75960 0.74866 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.55 127.77 1.48 2.33 15 2 N -0.13 -3.04 4.35 -206.54 -0.90 -3.94 15 3 N -0.29 -7.46 12.01 -56.17 -0.67 -8.13 15 4 C 0.03 0.92 12.04 85.46 1.03 1.95 15 5 C -0.06 -2.17 7.21 42.24 0.30 -1.86 15 6 C 0.60 25.12 7.36 86.77 0.64 25.76 15 7 O -0.56 -26.58 15.53 -3.90 -0.06 -26.64 15 8 N -0.69 -29.80 4.98 -449.03 -2.24 -32.04 15 9 C 0.25 12.74 2.21 44.24 0.10 12.84 15 10 H 0.06 3.25 7.58 -2.38 -0.02 3.23 15 11 C -0.56 -28.69 8.46 25.60 0.22 -28.48 15 12 H 0.09 4.28 7.74 -2.91 -0.02 4.26 15 13 C 0.02 0.88 5.20 84.66 0.44 1.32 15 14 N -0.87 -48.06 9.50 21.45 0.20 -47.85 15 15 Si 0.98 40.46 29.54 68.60 2.03 42.49 15 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 18 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 19 C 0.41 21.68 2.81 71.98 0.20 21.88 15 20 F -0.20 -10.15 16.94 44.97 0.76 -9.39 15 21 F -0.22 -11.29 15.68 44.97 0.70 -10.59 15 22 F -0.15 -8.31 12.91 44.97 0.58 -7.73 15 23 N -0.25 -7.43 11.84 -48.16 -0.57 -8.00 15 24 H 0.11 0.72 8.14 -2.39 -0.02 0.70 15 25 H 0.12 0.84 8.14 -2.39 -0.02 0.82 15 26 H 0.13 0.67 8.14 -2.38 -0.02 0.65 15 27 H 0.22 5.35 8.06 -2.91 -0.02 5.32 15 28 H 0.41 16.04 8.31 -92.70 -0.77 15.27 15 29 H 0.27 14.06 8.31 -92.70 -0.77 13.28 15 Total: -1.00 -67.64 275.85 4.70 -62.94 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.46 Total: 13.15 kcal Atomic # 6 Polarization: 31.33 SS G_CDS: 4.41 Total: 35.73 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.18 Total: -99.96 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 9 Polarization: -29.76 SS G_CDS: 2.05 Total: -27.71 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -67.64 4.70 -62.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928802892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.053 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds