Wall clock time and date at job start Tue Mar 31 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34586 * 125.74567 * 2 1 4 4 N 1.30871 * 107.62476 * 179.97438 * 3 2 1 5 5 C 1.34553 * 107.26804 * 359.97438 * 4 3 2 6 6 C 1.47876 * 126.04593 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99854 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00244 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00037 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47054 * 324.99327 * 9 8 6 11 11 C 1.50697 * 109.47016 * 205.00057 * 9 8 6 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 9 8 13 13 C 1.37881 * 120.00021 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99891 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00032 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47338 * 59.99500 * 15 13 11 17 17 H 1.48496 * 109.47117 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46756 * 299.99232 * 15 13 11 19 19 C 1.52997 * 109.47294 * 84.99596 * 9 8 6 20 20 F 1.39905 * 109.47157 * 179.97438 * 19 9 8 21 21 F 1.39900 * 109.47010 * 60.00333 * 19 9 8 22 22 F 1.39897 * 109.47422 * 300.00024 * 19 9 8 23 23 N 1.28851 * 125.75321 * 180.31103 * 2 1 3 24 24 H 1.08996 * 109.46955 * 90.00072 * 1 2 3 25 25 H 1.08993 * 109.47008 * 210.00130 * 1 2 3 26 26 H 1.08997 * 109.46968 * 330.00255 * 1 2 3 27 27 H 1.08002 * 126.19394 * 359.97438 * 3 2 1 28 28 H 0.97005 * 119.99645 * 359.97438 * 8 6 5 29 29 H 0.97001 * 120.00022 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4950 0.6853 0.0006 5 6 3.4750 -0.6601 0.0015 6 6 4.6576 -1.5480 0.0029 7 8 4.5115 -2.7547 0.0032 8 7 5.8973 -1.0192 0.0039 9 6 7.0688 -1.8988 0.0047 10 1 6.8535 -2.7901 0.5940 11 6 8.2432 -1.1707 0.6061 12 1 8.1285 -0.1543 0.9526 13 6 9.4644 -1.8019 0.7130 14 7 9.6041 -3.0395 0.2905 15 14 10.9199 -0.8996 1.4592 16 1 10.5962 -0.5059 2.8540 17 1 12.1074 -1.7912 1.4599 18 1 11.2131 0.3154 0.6572 19 6 7.4022 -2.3056 -1.4320 20 9 8.5213 -3.1451 -1.4313 21 9 7.6787 -1.1615 -2.1883 22 9 6.3120 -2.9815 -1.9903 23 7 2.2179 -1.0457 -0.0057 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9164 2.1191 -0.0004 28 1 6.0138 -0.0562 0.0033 29 1 10.4632 -3.4837 0.3661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803653.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:55 Heat of formation + Delta-G solvation = -73.084505 kcal Electronic energy + Delta-G solvation = -22154.949063 eV Core-core repulsion = 18087.505451 eV Total energy + Delta-G solvation = -4067.443613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.30000 -45.95194 -45.56457 -43.34446 -38.72124 -34.68213 -34.55842 -32.51852 -31.67056 -28.99556 -27.41032 -24.57583 -23.84525 -22.32180 -21.18976 -19.93269 -18.28590 -17.01440 -16.81417 -16.76416 -16.54707 -16.28690 -15.57549 -15.21188 -14.79812 -14.21397 -13.92777 -13.53036 -13.18641 -13.03570 -12.86121 -12.46442 -12.34620 -12.22791 -11.93096 -11.88605 -11.76794 -11.14945 -10.83150 -10.78191 -10.40254 -10.38416 -10.36597 -9.64962 -9.56990 -9.46983 -8.68350 -8.25462 -6.19633 -4.43407 1.55372 2.20213 2.26661 3.24509 3.28699 3.30578 3.55566 3.81970 4.21211 4.24115 4.36260 4.61029 4.73345 4.84413 4.97030 5.00811 5.19524 5.85738 5.91260 6.07136 6.24826 6.36211 6.49333 6.93127 7.15652 7.49621 7.66567 8.02074 8.37840 8.53791 8.83227 9.23771 10.72075 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.005424 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.592508 B = 5160.780084 C = 5671.111275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.311 5.311 3 C 0.184 3.816 4 N -0.482 5.482 5 C 0.156 3.844 6 C 0.603 3.397 7 O -0.514 6.514 8 N -0.688 5.688 9 C 0.246 3.754 10 H 0.088 0.912 11 C -0.551 4.551 12 H 0.080 0.920 13 C 0.065 3.935 14 N -0.840 5.840 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.417 3.583 20 F -0.135 7.135 21 F -0.207 7.207 22 F -0.217 7.217 23 N -0.257 5.257 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.225 0.775 28 H 0.409 0.591 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 8.809 -0.205 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.107 5.107 3 C -0.111 4.111 4 N -0.207 5.207 5 C -0.124 4.124 6 C 0.384 3.616 7 O -0.387 6.387 8 N -0.339 5.339 9 C 0.141 3.859 10 H 0.106 0.894 11 C -0.588 4.588 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.473 5.473 15 Si 0.743 3.257 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.360 3.640 20 F -0.116 7.116 21 F -0.189 7.189 22 F -0.199 7.199 23 N -0.096 5.096 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.241 0.759 28 H 0.244 0.756 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.279 7.238 -0.258 16.011 hybrid contribution 0.475 1.161 -0.045 1.255 sum -13.804 8.399 -0.303 16.161 Atomic orbital electron populations 1.22182 0.72614 1.05743 1.04768 1.47386 1.09150 1.04000 1.50183 1.26474 0.86029 0.95872 1.02754 1.71312 1.20179 1.09701 1.19497 1.24036 0.92301 0.89361 1.06703 1.16409 0.81314 0.85950 0.77930 1.90825 1.85437 1.13302 1.49118 1.45808 1.04163 1.11562 1.72323 1.19827 0.84033 0.93992 0.88081 0.89397 1.20850 0.93140 1.01073 1.43756 0.90229 1.25082 0.99282 0.95331 0.94679 1.70396 1.25689 1.11048 1.40211 0.86240 0.80421 0.79375 0.79628 1.19758 1.20913 1.19755 1.23105 0.74832 0.74620 0.91398 1.93410 1.50653 1.71448 1.96131 1.92996 1.94041 1.52372 1.79531 1.93074 1.56878 1.81642 1.88340 1.74360 1.03016 1.13003 1.19230 0.89354 0.88309 0.88176 0.75920 0.75551 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.38 59.85 0.68 1.13 15 2 N -0.31 -3.58 3.72 -69.40 -0.26 -3.84 15 3 C 0.18 2.02 12.62 -90.48 -1.14 0.87 15 4 N -0.48 -7.74 11.09 -12.36 -0.14 -7.88 15 5 C 0.16 2.99 7.96 -156.35 -1.24 1.75 15 6 C 0.60 13.69 7.36 -12.31 -0.09 13.60 15 7 O -0.51 -13.23 15.66 5.32 0.08 -13.15 15 8 N -0.69 -15.58 4.98 -55.87 -0.28 -15.86 15 9 C 0.25 6.37 2.21 -69.09 -0.15 6.21 15 10 H 0.09 2.49 7.58 -51.93 -0.39 2.10 15 11 C -0.55 -14.45 8.47 -34.44 -0.29 -14.74 15 12 H 0.08 1.98 7.74 -52.49 -0.41 1.57 15 13 C 0.07 1.72 5.20 -17.82 -0.09 1.63 15 14 N -0.84 -23.32 9.50 55.43 0.53 -22.79 15 15 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 15 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 19 C 0.42 11.07 2.81 37.16 0.10 11.18 15 20 F -0.14 -3.81 12.91 2.25 0.03 -3.78 15 21 F -0.21 -5.33 16.94 2.25 0.04 -5.29 15 22 F -0.22 -5.76 15.68 2.25 0.04 -5.73 15 23 N -0.26 -4.42 12.08 32.08 0.39 -4.03 15 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 15 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 15 27 H 0.22 1.11 8.06 -52.49 -0.42 0.69 15 28 H 0.41 8.46 8.25 -40.82 -0.34 8.12 15 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -34.62 275.77 -4.63 -39.25 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -1.96 Total: 1.93 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: -2.23 Total: 21.63 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.24 Total: -54.40 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 0.10 Total: -14.80 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.62 -4.63 -39.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803653.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.832 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds