Wall clock time and date at job start Tue Mar 31 2020 00:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34812 * 126.59586 * 2 1 4 4 C 1.36600 * 106.83783 * 180.26483 * 3 2 1 5 5 C 1.47521 * 125.76679 * 180.02562 * 4 3 2 6 6 O 1.21591 * 120.00497 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99561 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99588 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46953 * 324.99158 * 8 7 5 10 10 C 1.50702 * 109.46728 * 204.99837 * 8 7 5 11 11 H 1.08001 * 119.99709 * 265.30340 * 10 8 7 12 12 C 1.37877 * 120.00445 * 85.31361 * 10 8 7 13 13 N 1.31515 * 120.00275 * 185.04519 * 12 10 8 14 14 Si 1.86798 * 119.99877 * 5.03644 * 12 10 8 15 15 H 1.48499 * 109.47151 * 84.64938 * 14 12 10 16 16 H 1.48501 * 109.47532 * 204.65309 * 14 12 10 17 17 H 1.48506 * 109.47170 * 324.65382 * 14 12 10 18 18 C 1.52999 * 109.47571 * 84.99698 * 8 7 5 19 19 F 1.39895 * 109.47062 * 64.14426 * 18 8 7 20 20 F 1.39898 * 109.47359 * 184.14438 * 18 8 7 21 21 F 1.39902 * 109.46871 * 304.14309 * 18 8 7 22 22 N 1.34401 * 108.45787 * 359.97438 * 4 3 2 23 23 N 1.28761 * 109.52413 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.47133 * 269.71230 * 1 2 3 25 25 H 1.08998 * 109.47016 * 29.70801 * 1 2 3 26 26 H 1.08994 * 109.47441 * 149.71114 * 1 2 3 27 27 H 1.07994 * 126.57982 * 0.26487 * 3 2 1 28 28 H 0.96991 * 120.00149 * 359.97438 * 7 5 4 29 29 H 0.97000 * 120.00042 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5543 0.6206 -0.0060 5 6 4.7704 1.4556 -0.0077 6 8 4.6756 2.6678 -0.0040 7 7 5.9866 0.8748 -0.0134 8 6 7.1943 1.7040 -0.0145 9 1 7.0155 2.6055 -0.6006 10 6 8.3354 0.9287 -0.6210 11 1 9.0163 0.3833 0.0157 12 6 8.5103 0.9156 -1.9885 13 7 9.4439 0.1606 -2.5250 14 14 7.4208 1.9703 -3.0795 15 1 7.9792 3.3441 -3.1567 16 1 7.3655 1.3811 -4.4415 17 1 6.0513 2.0241 -2.5075 18 6 7.5481 2.0919 1.4226 19 9 7.8696 0.9412 2.1504 20 9 8.6449 2.9603 1.4148 21 9 6.4532 2.7287 2.0167 22 7 3.5238 -0.7231 -0.0091 23 7 2.3008 -1.1258 -0.0047 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 0.8926 -0.5093 26 1 -0.3634 -0.8873 -0.5183 27 1 1.9561 2.1161 0.0040 28 1 6.0622 -0.0922 -0.0160 29 1 9.5672 0.1518 -3.4871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804153.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:40 Heat of formation + Delta-G solvation = -95.066324 kcal Electronic energy + Delta-G solvation = -22128.570780 eV Core-core repulsion = 18060.173964 eV Total energy + Delta-G solvation = -4068.396816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.04983 -46.56628 -46.53282 -42.07877 -38.74400 -34.84233 -34.63060 -32.50029 -30.96969 -29.23698 -27.70304 -24.95313 -23.54959 -22.17606 -21.22050 -20.00424 -18.52125 -17.56743 -17.46005 -16.79318 -16.48046 -16.19513 -15.83085 -15.33625 -14.48683 -14.25315 -14.15407 -13.60254 -13.45151 -13.36198 -13.22260 -13.01689 -12.91415 -12.73619 -12.66390 -12.51936 -12.06700 -11.76253 -11.18960 -11.11079 -10.66490 -10.38685 -10.18262 -9.82058 -9.63885 -9.19013 -8.94192 -8.39699 -6.49276 -4.64180 1.18167 1.94477 2.03076 3.13834 3.22861 3.31744 3.58694 3.68762 3.99282 4.14304 4.27650 4.36093 4.71228 4.83367 4.93774 4.98234 5.04957 5.18881 5.24444 5.36268 5.48848 5.93974 6.31362 6.34389 6.91703 7.13303 7.86285 8.00145 8.36382 8.56745 8.79256 9.06124 10.59045 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.007026 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.027298 B = 3984.471195 C = 4752.991221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 C 0.085 3.915 4 C -0.090 4.090 5 C 0.589 3.411 6 O -0.545 6.545 7 N -0.695 5.695 8 C 0.204 3.796 9 H 0.090 0.910 10 C -0.538 4.538 11 H 0.096 0.904 12 C 0.100 3.900 13 N -0.858 5.858 14 Si 0.869 3.131 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.254 1.254 18 C 0.442 3.558 19 F -0.188 7.188 20 F -0.184 7.184 21 F -0.195 7.195 22 N -0.198 5.198 23 N -0.073 5.073 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.204 0.796 28 H 0.409 0.591 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 1.633 3.540 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.156 5.156 3 C -0.071 4.071 4 C -0.230 4.230 5 C 0.372 3.628 6 O -0.423 6.423 7 N -0.347 5.347 8 C 0.102 3.898 9 H 0.107 0.893 10 C -0.575 4.575 11 H 0.114 0.886 12 C -0.110 4.110 13 N -0.491 5.491 14 Si 0.694 3.306 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.177 1.177 18 C 0.386 3.614 19 F -0.169 7.169 20 F -0.165 7.165 21 F -0.177 7.177 22 N -0.072 5.072 23 N -0.053 5.053 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.221 0.779 28 H 0.246 0.754 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.866 0.897 3.395 16.249 hybrid contribution -0.707 1.124 -0.400 1.387 sum -16.573 2.020 2.995 16.962 Atomic orbital electron populations 1.22124 0.72937 1.05523 1.04524 1.50354 1.08914 1.05872 1.50438 1.23360 0.90263 0.94844 0.98653 1.21835 0.95050 0.90368 1.15736 1.17149 0.82357 0.86564 0.76684 1.90753 1.86823 1.13016 1.51662 1.47420 1.04185 1.11760 1.71286 1.20067 0.86438 0.96096 0.87240 0.89272 1.20774 1.10051 1.33296 0.93414 0.88595 1.24966 0.94396 0.93907 0.97696 1.69861 1.30913 1.35510 1.12776 0.86923 0.82452 0.81168 0.80086 1.19133 1.20639 1.17731 1.21508 0.73926 0.74168 0.91792 1.93089 1.92908 1.50452 1.80492 1.93102 1.55665 1.70738 1.97013 1.93133 1.54961 1.82939 1.86666 1.74666 1.12476 1.10550 1.09515 1.81974 0.93640 1.06469 1.23220 0.89433 0.88607 0.88276 0.77945 0.75363 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.51 59.85 0.69 1.17 15 2 N -0.37 -4.27 4.03 -67.86 -0.27 -4.55 15 3 C 0.09 1.11 11.31 -16.83 -0.19 0.92 15 4 C -0.09 -1.58 6.99 -83.55 -0.58 -2.17 15 5 C 0.59 12.20 7.11 -12.47 -0.09 12.12 15 6 O -0.55 -12.15 15.47 5.29 0.08 -12.07 15 7 N -0.70 -15.17 4.93 -55.98 -0.28 -15.45 15 8 C 0.20 4.83 1.45 -69.08 -0.10 4.73 15 9 H 0.09 2.18 5.33 -51.93 -0.28 1.90 15 10 C -0.54 -14.05 8.68 -34.44 -0.30 -14.35 15 11 H 0.10 2.70 7.69 -52.49 -0.40 2.30 15 12 C 0.10 2.67 5.47 -17.82 -0.10 2.57 15 13 N -0.86 -23.94 13.96 55.43 0.77 -23.17 15 14 Si 0.87 20.37 26.92 -169.99 -4.58 15.80 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 17 H -0.25 -5.97 6.82 56.52 0.39 -5.58 15 18 C 0.44 10.00 2.83 37.16 0.11 10.11 15 19 F -0.19 -4.20 16.65 2.25 0.04 -4.17 15 20 F -0.18 -4.15 17.12 2.25 0.04 -4.11 15 21 F -0.20 -4.32 15.57 2.25 0.04 -4.28 15 22 N -0.20 -3.55 12.04 32.85 0.40 -3.15 15 23 N -0.07 -1.12 13.78 60.35 0.83 -0.29 15 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 15 25 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 15 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 15 27 H 0.20 1.96 8.06 -52.49 -0.42 1.53 15 28 H 0.41 8.65 8.28 -40.82 -0.34 8.31 15 29 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -31.77 278.93 -1.15 -32.92 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -1.86 Total: 3.21 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -0.57 Total: 15.10 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 1.45 Total: -46.61 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 0.11 Total: -12.56 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.58 Total: 15.80 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.77 -1.15 -32.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804153.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.146 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds