Wall clock time and date at job start Tue Mar 31 2020 00:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34812 * 126.59586 * 2 1 4 4 C 1.36600 * 106.83783 * 180.26483 * 3 2 1 5 5 C 1.47521 * 125.76679 * 180.02562 * 4 3 2 6 6 O 1.21591 * 120.00497 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99561 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99588 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46953 * 324.99158 * 8 7 5 10 10 C 1.50702 * 109.46728 * 204.99837 * 8 7 5 11 11 H 1.08001 * 119.99709 * 265.30340 * 10 8 7 12 12 C 1.37877 * 120.00445 * 85.31361 * 10 8 7 13 13 N 1.31515 * 120.00275 * 185.04519 * 12 10 8 14 14 Si 1.86798 * 119.99877 * 5.03644 * 12 10 8 15 15 H 1.48499 * 109.47151 * 84.64938 * 14 12 10 16 16 H 1.48501 * 109.47532 * 204.65309 * 14 12 10 17 17 H 1.48506 * 109.47170 * 324.65382 * 14 12 10 18 18 C 1.52999 * 109.47571 * 84.99698 * 8 7 5 19 19 F 1.39895 * 109.47062 * 64.14426 * 18 8 7 20 20 F 1.39898 * 109.47359 * 184.14438 * 18 8 7 21 21 F 1.39902 * 109.46871 * 304.14309 * 18 8 7 22 22 N 1.34401 * 108.45787 * 359.97438 * 4 3 2 23 23 N 1.28761 * 109.52413 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.47133 * 269.71230 * 1 2 3 25 25 H 1.08998 * 109.47016 * 29.70801 * 1 2 3 26 26 H 1.08994 * 109.47441 * 149.71114 * 1 2 3 27 27 H 1.07994 * 126.57982 * 0.26487 * 3 2 1 28 28 H 0.96991 * 120.00149 * 359.97438 * 7 5 4 29 29 H 0.97000 * 120.00042 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5543 0.6206 -0.0060 5 6 4.7704 1.4556 -0.0077 6 8 4.6756 2.6678 -0.0040 7 7 5.9866 0.8748 -0.0134 8 6 7.1943 1.7040 -0.0145 9 1 7.0155 2.6055 -0.6006 10 6 8.3354 0.9287 -0.6210 11 1 9.0163 0.3833 0.0157 12 6 8.5103 0.9156 -1.9885 13 7 9.4439 0.1606 -2.5250 14 14 7.4208 1.9703 -3.0795 15 1 7.9792 3.3441 -3.1567 16 1 7.3655 1.3811 -4.4415 17 1 6.0513 2.0241 -2.5075 18 6 7.5481 2.0919 1.4226 19 9 7.8696 0.9412 2.1504 20 9 8.6449 2.9603 1.4148 21 9 6.4532 2.7287 2.0167 22 7 3.5238 -0.7231 -0.0091 23 7 2.3008 -1.1258 -0.0047 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 0.8926 -0.5093 26 1 -0.3634 -0.8873 -0.5183 27 1 1.9561 2.1161 0.0040 28 1 6.0622 -0.0922 -0.0160 29 1 9.5672 0.1518 -3.4871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804153.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:39 Heat of formation + Delta-G solvation = -119.744034 kcal Electronic energy + Delta-G solvation = -22129.640886 eV Core-core repulsion = 18060.173964 eV Total energy + Delta-G solvation = -4069.466922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.88590 -48.38896 -48.37429 -43.19958 -40.38290 -36.63929 -35.60807 -34.44891 -32.26035 -30.83511 -28.56602 -26.92160 -24.95902 -23.23641 -22.88220 -21.52663 -20.24163 -19.34598 -19.01293 -18.55572 -18.37359 -17.23374 -17.05970 -17.03214 -15.97787 -15.61284 -15.57363 -15.31725 -15.23150 -14.87445 -14.79484 -14.56930 -14.50814 -14.44568 -14.10161 -13.93013 -13.64952 -13.13092 -12.99607 -12.56209 -12.26133 -12.03158 -11.83991 -11.31499 -11.31307 -10.95697 -10.41908 -10.09916 -8.54011 -6.73280 0.15467 0.60064 1.18953 1.29058 1.33328 1.44069 1.89773 2.09473 2.18909 2.31807 2.94446 3.14223 3.27663 3.35011 3.44363 3.65994 3.91482 3.98647 4.35959 4.39778 4.54553 4.69344 4.80598 4.93753 5.38473 5.47627 5.87096 6.43851 6.55365 6.92062 6.99901 7.15276 8.58377 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.007026 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.027298 B = 3984.471195 C = 4752.991221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.350 5.350 3 C 0.112 3.888 4 C -0.128 4.128 5 C 0.591 3.409 6 O -0.563 6.563 7 N -0.702 5.702 8 C 0.212 3.788 9 H 0.085 0.915 10 C -0.542 4.542 11 H 0.065 0.935 12 C 0.061 3.939 13 N -0.898 5.898 14 Si 0.924 3.076 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.255 1.255 18 C 0.444 3.556 19 F -0.188 7.188 20 F -0.184 7.184 21 F -0.189 7.189 22 N -0.229 5.229 23 N -0.091 5.091 24 H 0.110 0.890 25 H 0.131 0.869 26 H 0.109 0.891 27 H 0.242 0.758 28 H 0.411 0.589 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 2.622 3.364 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.135 5.135 3 C -0.046 4.046 4 C -0.269 4.269 5 C 0.377 3.623 6 O -0.442 6.442 7 N -0.352 5.352 8 C 0.108 3.892 9 H 0.103 0.897 10 C -0.580 4.580 11 H 0.083 0.917 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.747 3.253 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.179 1.179 18 C 0.389 3.611 19 F -0.169 7.169 20 F -0.165 7.165 21 F -0.171 7.171 22 N -0.103 5.103 23 N -0.072 5.072 24 H 0.128 0.872 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.258 0.742 28 H 0.248 0.752 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.955 1.859 3.230 19.318 hybrid contribution 0.075 0.795 -0.254 0.838 sum -18.880 2.654 2.976 19.296 Atomic orbital electron populations 1.22751 0.69028 1.07863 1.06710 1.50754 1.10782 1.04381 1.47608 1.23822 0.88713 0.96438 0.95629 1.21535 0.95280 0.90425 1.19613 1.17413 0.82706 0.86674 0.75530 1.90727 1.87200 1.13814 1.52485 1.47064 1.04349 1.11603 1.72233 1.19795 0.86297 0.95575 0.87551 0.89727 1.20721 1.10664 1.33256 0.93340 0.91666 1.25584 0.95402 0.94748 0.98773 1.69940 1.32700 1.37245 1.13404 0.86067 0.80634 0.79970 0.78677 1.18322 1.19871 1.17891 1.21359 0.74036 0.74211 0.91539 1.93089 1.92918 1.50505 1.80400 1.93100 1.55706 1.70704 1.97007 1.93140 1.54642 1.82791 1.86496 1.74639 1.13941 1.11018 1.10681 1.81868 0.93450 1.08061 1.23782 0.87207 0.85117 0.87219 0.74236 0.75174 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.51 127.77 1.47 1.92 15 2 N -0.35 -6.87 4.03 -368.60 -1.49 -8.36 15 3 C 0.11 2.55 11.31 83.85 0.95 3.50 15 4 C -0.13 -4.31 6.99 40.82 0.29 -4.02 15 5 C 0.59 23.91 7.11 86.69 0.62 24.53 15 6 O -0.56 -24.25 15.47 -4.00 -0.06 -24.31 15 7 N -0.70 -30.60 4.93 -449.28 -2.21 -32.82 15 8 C 0.21 10.04 1.45 44.25 0.06 10.10 15 9 H 0.09 4.10 5.33 -2.39 -0.01 4.08 15 10 C -0.54 -28.91 8.68 25.60 0.22 -28.69 15 11 H 0.07 3.82 7.69 -2.91 -0.02 3.80 15 12 C 0.06 3.30 5.47 84.65 0.46 3.76 15 13 N -0.90 -51.05 13.96 21.45 0.30 -50.75 15 14 Si 0.92 41.93 26.92 68.60 1.85 43.77 15 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 17 H -0.26 -11.56 6.82 99.48 0.68 -10.88 15 18 C 0.44 20.08 2.83 71.98 0.20 20.28 15 19 F -0.19 -8.46 16.65 44.97 0.75 -7.71 15 20 F -0.18 -8.27 17.12 44.97 0.77 -7.50 15 21 F -0.19 -8.20 15.57 44.97 0.70 -7.50 15 22 N -0.23 -8.03 12.04 -49.99 -0.60 -8.64 15 23 N -0.09 -2.66 13.78 37.02 0.51 -2.15 15 24 H 0.11 0.30 8.14 -2.39 -0.02 0.28 15 25 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 15 26 H 0.11 0.52 8.14 -2.39 -0.02 0.50 15 27 H 0.24 3.46 8.06 -2.91 -0.02 3.43 15 28 H 0.41 17.70 8.28 -92.71 -0.77 16.93 15 29 H 0.28 14.76 8.31 -92.71 -0.77 13.99 15 Total: -1.00 -69.64 278.93 5.22 -64.41 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.44 Total: 10.14 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 4.27 Total: 31.39 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.49 Total: -102.70 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 9 Polarization: -24.93 SS G_CDS: 2.22 Total: -22.71 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.85 Total: 43.77 kcal Total: -69.64 5.22 -64.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804153.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.330 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds