Wall clock time and date at job start Tue Mar 31 2020 00:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47134 * 265.16082 * 3 2 1 5 5 H 1.48492 * 109.47166 * 25.16444 * 3 2 1 6 6 H 1.48505 * 109.46789 * 145.16266 * 3 2 1 7 7 C 1.37876 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 354.05677 * 7 2 1 9 9 C 1.50696 * 119.99996 * 174.06086 * 7 2 1 10 10 H 1.09000 * 109.46994 * 56.79468 * 9 7 2 11 11 N 1.46498 * 109.47165 * 296.79496 * 9 7 2 12 12 C 1.34776 * 120.00102 * 154.99824 * 11 9 7 13 13 O 1.21287 * 120.00193 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00041 * 179.97438 * 12 11 9 15 15 N 1.46499 * 109.47163 * 180.02562 * 14 12 11 16 16 C 1.34431 * 126.82491 * 125.00017 * 15 14 12 17 17 N 1.30827 * 108.08003 * 179.97438 * 16 15 14 18 18 C 1.33237 * 109.82883 * 0.02562 * 17 16 15 19 19 N 1.30709 * 108.94864 * 359.75265 * 18 17 16 20 20 C 1.53002 * 109.47462 * 176.79357 * 9 7 2 21 21 F 1.39898 * 109.47144 * 65.25014 * 20 9 7 22 22 F 1.39902 * 109.47241 * 305.25061 * 20 9 7 23 23 F 1.39901 * 109.47146 * 185.25049 * 20 9 7 24 24 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00381 * 334.99738 * 11 9 7 26 26 H 1.08996 * 109.47289 * 299.99936 * 14 12 11 27 27 H 1.08998 * 109.47250 * 60.00322 * 14 12 11 28 28 H 1.08001 * 125.95811 * 0.02562 * 16 15 14 29 29 H 1.08003 * 125.52965 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5990 1.9873 -1.3950 5 1 1.3994 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1941 -0.0005 8 1 1.4688 -2.1269 0.0959 9 6 3.5054 -1.1976 -0.1356 10 1 3.9430 -0.5923 0.6583 11 7 3.8799 -0.6402 -1.4376 12 6 5.0929 -0.0775 -1.6060 13 8 5.8748 -0.0331 -0.6799 14 6 5.4784 0.4954 -2.9455 15 7 6.8350 1.0431 -2.8703 16 6 7.8755 0.7298 -3.6618 17 7 8.9076 1.4335 -3.2731 18 6 8.5667 2.2036 -2.2407 19 7 7.3058 2.0036 -1.9601 20 6 4.0239 -2.6330 -0.0272 21 9 3.5578 -3.3806 -1.1139 22 9 3.5652 -3.2059 1.1639 23 9 5.4229 -2.6251 -0.0323 24 1 -0.4849 0.8401 -0.0004 25 1 3.2548 -0.6760 -2.1785 26 1 5.4456 -0.2907 -3.6999 27 1 4.7807 1.2879 -3.2161 28 1 7.8615 0.0214 -4.4769 29 1 9.2244 2.8855 -1.7221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813657.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:36 Heat of formation + Delta-G solvation = -93.141141 kcal Electronic energy + Delta-G solvation = -22306.070734 eV Core-core repulsion = 18237.757400 eV Total energy + Delta-G solvation = -4068.313334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.20737 -46.72308 -46.68826 -41.99175 -39.25244 -35.14086 -33.89836 -32.62454 -31.13441 -29.85833 -27.44747 -25.12769 -22.56870 -21.91881 -21.35409 -20.17181 -18.42352 -17.71913 -17.40067 -17.10331 -16.70938 -16.51261 -15.70305 -15.24394 -14.70802 -14.60142 -14.10731 -13.88328 -13.60407 -13.54464 -13.16163 -13.05494 -12.89918 -12.87066 -12.76706 -12.63750 -11.94389 -11.70005 -11.27480 -10.78764 -10.30166 -10.15508 -10.01726 -9.95130 -9.69832 -9.38510 -9.06304 -8.66037 -6.61521 -4.75355 1.68340 2.23331 2.77264 2.98496 3.04031 3.16008 3.24481 3.40236 3.77114 4.01056 4.31551 4.47193 4.69422 4.84676 4.86693 4.95266 4.98817 5.09097 5.30718 5.34189 6.22170 6.27467 6.49534 6.72877 6.78799 6.88023 7.71717 8.02753 8.12366 8.40089 8.54750 8.91931 10.46597 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.007297 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.955971 B = 3836.501361 C = 4796.792538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.097 3.903 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.096 0.904 9 C 0.204 3.796 10 H 0.092 0.908 11 N -0.713 5.713 12 C 0.485 3.515 13 O -0.509 6.509 14 C 0.104 3.896 15 N -0.363 5.363 16 C 0.251 3.749 17 N -0.549 5.549 18 C 0.187 3.813 19 N -0.287 5.287 20 C 0.443 3.557 21 F -0.189 7.189 22 F -0.182 7.182 23 F -0.194 7.194 24 H 0.276 0.724 25 H 0.403 0.597 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.218 0.782 29 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 0.789 -8.295 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.112 4.112 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.576 4.576 8 H 0.114 0.886 9 C 0.102 3.898 10 H 0.110 0.890 11 N -0.368 5.368 12 C 0.268 3.732 13 O -0.384 6.384 14 C -0.022 4.022 15 N -0.155 5.155 16 C -0.045 4.045 17 N -0.276 5.276 18 C -0.116 4.116 19 N -0.113 5.113 20 C 0.388 3.612 21 F -0.171 7.171 22 F -0.164 7.164 23 F -0.176 7.176 24 H 0.086 0.914 25 H 0.240 0.760 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.234 0.766 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.679 1.223 -7.166 11.321 hybrid contribution -0.053 0.376 -0.522 0.645 sum 8.626 1.598 -7.688 11.665 Atomic orbital electron populations 1.69870 1.06382 1.28432 1.44520 1.24910 0.94769 0.99220 0.92331 0.86800 0.80619 0.82609 0.79528 1.19772 1.20993 1.18198 1.20796 0.86377 0.96640 1.53809 0.88560 1.20265 0.98840 0.85220 0.85515 0.89023 1.47549 1.15060 1.58578 1.15610 1.20656 0.83317 0.79489 0.89760 1.90781 1.50216 1.55829 1.41538 1.21770 0.80908 1.00687 0.98863 1.49990 1.10246 1.30968 1.24255 1.26019 0.82779 0.98888 0.96845 1.70490 1.28813 1.12452 1.15836 1.25972 0.91975 0.99280 0.94408 1.78228 1.13346 1.07736 1.12033 1.21435 0.74526 0.92082 0.73201 1.93083 1.88588 1.79671 1.55763 1.93117 1.88817 1.86754 1.47712 1.93154 1.31042 1.97138 1.96234 0.91394 0.76043 0.85131 0.86477 0.76571 0.76901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.81 13.96 55.43 0.77 -22.04 15 2 C 0.10 2.44 5.46 -17.82 -0.10 2.34 15 3 Si 0.88 19.69 26.13 -169.99 -4.44 15.25 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.26 -6.13 6.55 56.52 0.37 -5.75 15 7 C -0.54 -13.20 8.64 -34.44 -0.30 -13.50 15 8 H 0.10 2.59 7.91 -52.49 -0.42 2.17 15 9 C 0.20 4.47 1.41 -69.08 -0.10 4.38 15 10 H 0.09 2.19 6.29 -51.93 -0.33 1.86 15 11 N -0.71 -13.16 3.20 -54.93 -0.18 -13.34 15 12 C 0.48 8.72 7.26 -10.99 -0.08 8.64 15 13 O -0.51 -11.31 14.32 5.55 0.08 -11.23 15 14 C 0.10 1.31 7.03 -5.19 -0.04 1.27 15 15 N -0.36 -5.27 3.40 -63.82 -0.22 -5.49 15 16 C 0.25 3.03 12.63 -90.66 -1.14 1.89 15 17 N -0.55 -7.78 11.19 -15.83 -0.18 -7.95 15 18 C 0.19 2.71 13.03 -91.82 -1.20 1.51 15 19 N -0.29 -4.92 11.83 29.29 0.35 -4.58 15 20 C 0.44 9.35 2.79 37.16 0.10 9.46 15 21 F -0.19 -3.81 16.97 2.25 0.04 -3.77 15 22 F -0.18 -3.96 16.83 2.25 0.04 -3.92 15 23 F -0.19 -4.12 15.84 2.25 0.04 -4.08 15 24 H 0.28 6.85 8.31 -40.82 -0.34 6.51 15 25 H 0.40 6.45 8.59 -40.82 -0.35 6.10 15 26 H 0.13 0.99 8.09 -51.93 -0.42 0.57 15 27 H 0.12 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.22 1.46 8.06 -52.49 -0.42 1.03 15 29 H 0.21 2.28 8.06 -52.48 -0.42 1.86 15 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -32.74 276.14 -4.33 -37.07 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -1.95 Total: 3.94 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: -2.85 Total: 15.98 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.55 Total: -53.40 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 0.11 Total: -11.78 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.44 Total: 15.25 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.74 -4.33 -37.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813657.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.068 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds