Wall clock time and date at job start Tue Mar 31 2020 00:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47134 * 265.16082 * 3 2 1 5 5 H 1.48492 * 109.47166 * 25.16444 * 3 2 1 6 6 H 1.48505 * 109.46789 * 145.16266 * 3 2 1 7 7 C 1.37876 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 354.05677 * 7 2 1 9 9 C 1.50696 * 119.99996 * 174.06086 * 7 2 1 10 10 H 1.09000 * 109.46994 * 56.79468 * 9 7 2 11 11 N 1.46498 * 109.47165 * 296.79496 * 9 7 2 12 12 C 1.34776 * 120.00102 * 154.99824 * 11 9 7 13 13 O 1.21287 * 120.00193 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00041 * 179.97438 * 12 11 9 15 15 N 1.46499 * 109.47163 * 180.02562 * 14 12 11 16 16 C 1.34431 * 126.82491 * 125.00017 * 15 14 12 17 17 N 1.30827 * 108.08003 * 179.97438 * 16 15 14 18 18 C 1.33237 * 109.82883 * 0.02562 * 17 16 15 19 19 N 1.30709 * 108.94864 * 359.75265 * 18 17 16 20 20 C 1.53002 * 109.47462 * 176.79357 * 9 7 2 21 21 F 1.39898 * 109.47144 * 65.25014 * 20 9 7 22 22 F 1.39902 * 109.47241 * 305.25061 * 20 9 7 23 23 F 1.39901 * 109.47146 * 185.25049 * 20 9 7 24 24 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00381 * 334.99738 * 11 9 7 26 26 H 1.08996 * 109.47289 * 299.99936 * 14 12 11 27 27 H 1.08998 * 109.47250 * 60.00322 * 14 12 11 28 28 H 1.08001 * 125.95811 * 0.02562 * 16 15 14 29 29 H 1.08003 * 125.52965 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5990 1.9873 -1.3950 5 1 1.3994 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1941 -0.0005 8 1 1.4688 -2.1269 0.0959 9 6 3.5054 -1.1976 -0.1356 10 1 3.9430 -0.5923 0.6583 11 7 3.8799 -0.6402 -1.4376 12 6 5.0929 -0.0775 -1.6060 13 8 5.8748 -0.0331 -0.6799 14 6 5.4784 0.4954 -2.9455 15 7 6.8350 1.0431 -2.8703 16 6 7.8755 0.7298 -3.6618 17 7 8.9076 1.4335 -3.2731 18 6 8.5667 2.2036 -2.2407 19 7 7.3058 2.0036 -1.9601 20 6 4.0239 -2.6330 -0.0272 21 9 3.5578 -3.3806 -1.1139 22 9 3.5652 -3.2059 1.1639 23 9 5.4229 -2.6251 -0.0323 24 1 -0.4849 0.8401 -0.0004 25 1 3.2548 -0.6760 -2.1785 26 1 5.4456 -0.2907 -3.6999 27 1 4.7807 1.2879 -3.2161 28 1 7.8615 0.0214 -4.4769 29 1 9.2244 2.8855 -1.7221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813657.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:36 Heat of formation + Delta-G solvation = -115.246677 kcal Electronic energy + Delta-G solvation = -22307.029302 eV Core-core repulsion = 18237.757400 eV Total energy + Delta-G solvation = -4069.271902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.92970 -48.44912 -48.40029 -42.99348 -40.72162 -36.80636 -35.00038 -34.46167 -32.16855 -31.44229 -28.64097 -26.97969 -23.87761 -22.90983 -22.82725 -21.59001 -20.14960 -19.40674 -18.85518 -18.47019 -18.23241 -18.16226 -17.01635 -16.55844 -16.17233 -15.77933 -15.49090 -15.32168 -15.20452 -14.94324 -14.88387 -14.79134 -14.61282 -14.54772 -14.39187 -13.88860 -13.59287 -13.02148 -12.80490 -12.54974 -12.15365 -11.93828 -11.41056 -11.04017 -11.00831 -10.76641 -10.55757 -10.25146 -8.55941 -6.72987 0.69783 1.18062 1.28220 1.30234 1.41981 1.46718 1.92055 2.04472 2.14123 2.14843 2.90022 3.11424 3.30916 3.37709 3.53830 3.62890 3.78370 4.07754 4.10884 4.40348 4.50719 4.91639 5.23393 5.29026 5.49796 5.84332 5.88963 6.40705 6.54598 6.97130 7.11663 7.15986 8.56539 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.007297 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.955971 B = 3836.501361 C = 4796.792538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.926 3.074 4 H -0.240 1.240 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.214 3.786 10 H 0.070 0.930 11 N -0.709 5.709 12 C 0.481 3.519 13 O -0.555 6.555 14 C 0.110 3.890 15 N -0.377 5.377 16 C 0.267 3.733 17 N -0.574 5.574 18 C 0.186 3.814 19 N -0.344 5.344 20 C 0.447 3.553 21 F -0.181 7.181 22 F -0.188 7.188 23 F -0.192 7.192 24 H 0.280 0.720 25 H 0.418 0.582 26 H 0.190 0.810 27 H 0.138 0.862 28 H 0.270 0.730 29 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 1.060 -10.681 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.751 3.249 4 H -0.163 1.163 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.109 3.891 10 H 0.088 0.912 11 N -0.365 5.365 12 C 0.266 3.734 13 O -0.432 6.432 14 C -0.015 4.015 15 N -0.168 5.168 16 C -0.029 4.029 17 N -0.301 5.301 18 C -0.116 4.116 19 N -0.171 5.171 20 C 0.391 3.609 21 F -0.162 7.162 22 F -0.170 7.170 23 F -0.174 7.174 24 H 0.090 0.910 25 H 0.257 0.743 26 H 0.207 0.793 27 H 0.156 0.844 28 H 0.286 0.714 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.699 1.496 -9.603 13.730 hybrid contribution -0.299 0.205 0.225 0.427 sum 9.400 1.701 -9.377 13.386 Atomic orbital electron populations 1.69937 1.07630 1.29337 1.46487 1.25366 0.95055 1.01401 0.92006 0.86061 0.78262 0.79751 0.80826 1.16320 1.21260 1.20761 1.20714 0.87577 0.95498 1.54076 0.91552 1.19784 0.96942 0.85608 0.86750 0.91226 1.47034 1.16186 1.58691 1.14553 1.21544 0.82001 0.78248 0.91564 1.90772 1.51347 1.57302 1.43739 1.22004 0.80700 1.02669 0.96096 1.50095 1.11225 1.30996 1.24480 1.27067 0.81273 0.97954 0.96602 1.70529 1.29982 1.13384 1.16253 1.26489 0.91711 0.99177 0.94266 1.78145 1.14712 1.09904 1.14349 1.21278 0.74526 0.91817 0.73243 1.93096 1.88499 1.79405 1.55239 1.93105 1.88912 1.86817 1.48175 1.93157 1.30878 1.97124 1.96235 0.90999 0.74270 0.79318 0.84438 0.71450 0.74787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.01 13.96 21.45 0.30 -47.71 15 2 C 0.07 3.40 5.46 84.65 0.46 3.86 15 3 Si 0.93 40.12 26.13 68.60 1.79 41.91 15 4 H -0.24 -9.03 7.11 99.48 0.71 -8.32 15 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.28 -13.33 6.55 99.48 0.65 -12.68 15 7 C -0.54 -26.69 8.64 25.60 0.22 -26.47 15 8 H 0.07 3.64 7.91 -2.91 -0.02 3.62 15 9 C 0.21 9.29 1.41 44.24 0.06 9.36 15 10 H 0.07 3.37 6.29 -2.39 -0.02 3.36 15 11 N -0.71 -24.69 3.20 -446.10 -1.43 -26.12 15 12 C 0.48 16.07 7.26 87.66 0.64 16.71 15 13 O -0.55 -24.05 14.32 -3.05 -0.04 -24.09 15 14 C 0.11 2.29 7.03 85.63 0.60 2.89 15 15 N -0.38 -9.66 3.40 -355.81 -1.21 -10.88 15 16 C 0.27 5.35 12.63 180.36 2.28 7.63 15 17 N -0.57 -14.79 11.19 -204.01 -2.28 -17.07 15 18 C 0.19 5.12 13.03 180.77 2.36 7.48 15 19 N -0.34 -11.27 11.83 -61.25 -0.72 -12.00 15 20 C 0.45 18.63 2.79 71.98 0.20 18.83 15 21 F -0.18 -7.04 16.97 44.97 0.76 -6.27 15 22 F -0.19 -8.22 16.83 44.97 0.76 -7.47 15 23 F -0.19 -7.99 15.84 44.97 0.71 -7.28 15 24 H 0.28 13.93 8.31 -92.71 -0.77 13.16 15 25 H 0.42 12.17 8.59 -92.71 -0.80 11.37 15 26 H 0.19 1.64 8.09 -2.39 -0.02 1.62 15 27 H 0.14 2.37 8.14 -2.39 -0.02 2.35 15 28 H 0.27 1.99 8.06 -2.91 -0.02 1.97 15 29 H 0.24 4.77 8.06 -2.91 -0.02 4.75 15 Total: -1.00 -73.09 276.14 5.83 -67.26 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.37 Total: 9.42 kcal Atomic # 6 Polarization: 33.46 SS G_CDS: 6.82 Total: 40.28 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.34 Total: -113.77 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 9 Polarization: -23.25 SS G_CDS: 2.23 Total: -21.02 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.79 Total: 41.91 kcal Total: -73.09 5.83 -67.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813657.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.983 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds