Wall clock time and date at job start Tue Mar 31 2020 00:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48504 * 109.46912 * 274.98359 * 3 2 1 5 5 H 1.48496 * 109.47386 * 34.98073 * 3 2 1 6 6 H 1.48497 * 109.47327 * 154.98429 * 3 2 1 7 7 C 1.39892 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99716 * 147.60585 * 7 2 1 9 9 C 1.41152 * 120.00299 * 327.60940 * 7 2 1 10 10 C 1.40871 * 120.16287 * 157.91614 * 9 7 2 11 11 C 1.36376 * 119.82385 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.17271 * 0.02937 * 11 10 9 13 13 N 1.39236 * 119.83327 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00550 * 37.78731 * 13 12 11 15 15 O 1.21580 * 119.99884 * 356.69558 * 14 13 12 16 16 N 1.34772 * 120.00085 * 176.69571 * 14 13 12 17 17 C 1.46500 * 120.00110 * 179.97438 * 16 14 13 18 18 C 1.53049 * 113.15210 * 255.37738 * 17 16 14 19 19 S 1.81426 * 89.88624 * 211.84852 * 18 17 16 20 20 C 1.53040 * 113.15658 * 155.00134 * 17 16 14 21 21 C 1.39483 * 120.33030 * 0.24564 * 12 11 10 22 22 C 1.36380 * 120.16682 * 359.44591 * 21 12 11 23 23 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.08789 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.91289 * 180.02562 * 11 10 9 26 26 H 0.97008 * 119.99565 * 217.78350 * 13 12 11 27 27 H 0.97001 * 120.00629 * 0.02562 * 16 14 13 28 28 H 1.09007 * 112.52683 * 25.18648 * 17 16 14 29 29 H 1.09000 * 113.14822 * 327.10784 * 18 17 16 30 30 H 1.08998 * 113.14873 * 96.59208 * 18 17 16 31 31 H 1.09003 * 113.14895 * 263.40768 * 20 17 16 32 32 H 1.09001 * 113.14237 * 32.84730 * 20 17 16 33 33 H 1.08002 * 119.91633 * 179.70911 * 21 12 11 34 34 H 1.08003 * 120.08210 * 180.25374 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4969 2.6201 0.8026 6 1 3.5890 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2844 -0.5006 9 6 1.4674 -2.3386 0.6559 10 6 1.8851 -3.6348 0.2958 11 6 1.3575 -4.7190 0.9331 12 6 0.4063 -4.5468 1.9386 13 7 -0.1281 -5.6587 2.5843 14 6 0.6571 -6.7179 2.8637 15 8 1.8169 -6.7278 2.4988 16 7 0.1568 -7.7659 3.5474 17 6 1.0101 -8.9175 3.8506 18 6 0.7148 -10.1337 2.9697 19 16 1.1767 -11.2322 4.3377 20 6 0.5484 -9.7013 5.0813 21 6 -0.0164 -3.2667 2.2966 22 6 0.5067 -2.1727 1.6726 23 1 -0.4850 0.8400 -0.0004 24 1 2.6212 -3.7697 -0.4828 25 1 1.6771 -5.7134 0.6585 26 1 -1.0656 -5.6709 2.8332 27 1 -0.7686 -7.7582 3.8382 28 1 2.0681 -8.6569 3.8806 29 1 -0.3356 -10.2156 2.6903 30 1 1.3825 -10.2137 2.1118 31 1 1.0766 -9.4191 5.9920 32 1 -0.5341 -9.6991 5.2092 33 1 -0.7568 -3.1414 3.0729 34 1 0.1814 -1.1819 1.9538 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929430513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:06 Heat of formation + Delta-G solvation = 16.935422 kcal Electronic energy + Delta-G solvation = -18400.614234 eV Core-core repulsion = 15425.224133 eV Total energy + Delta-G solvation = -2975.390101 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06508 -37.84552 -36.61146 -34.40846 -33.21470 -32.03038 -29.54633 -28.81440 -26.59598 -25.01031 -22.54420 -21.37040 -20.83707 -20.21760 -18.16326 -17.33769 -17.14251 -16.37600 -15.80033 -15.21939 -15.01598 -14.50031 -14.14015 -13.95738 -13.42796 -13.29010 -12.94046 -12.67906 -12.23366 -12.07941 -12.00187 -11.49523 -11.25459 -11.15402 -10.94989 -10.80438 -10.53174 -10.21009 -9.75326 -9.63066 -9.21760 -9.10961 -8.70507 -8.10708 -7.54026 -7.13471 -6.87551 -4.26258 1.45078 1.56640 2.65270 2.95525 3.03970 3.06014 3.11663 3.18348 3.57349 3.89754 4.15709 4.50010 4.52242 4.57316 4.61583 4.95733 5.12908 5.38733 5.61329 5.68845 6.18558 6.35879 6.43951 6.76921 6.79461 7.00953 7.09060 7.24506 7.30868 7.59538 7.85046 7.94434 8.03573 8.27147 8.43699 8.56454 8.85070 8.89417 9.07414 10.02800 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.061445 B = 0.003001 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.585021 B = 9327.518986 C = 9512.619680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.223 4.223 11 C -0.065 4.065 12 C -0.006 4.006 13 N -0.662 5.662 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.740 5.740 17 C 0.172 3.828 18 C -0.102 4.102 19 S -0.276 6.276 20 C -0.097 4.097 21 C -0.103 4.103 22 C -0.171 4.171 23 H 0.283 0.717 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.391 0.609 27 H 0.395 0.605 28 H 0.136 0.864 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -12.132 7.810 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.243 4.243 11 C -0.085 4.085 12 C -0.098 4.098 13 N -0.307 5.307 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.397 5.397 17 C 0.063 3.937 18 C -0.253 4.253 19 S -0.052 6.052 20 C -0.247 4.247 21 C -0.123 4.123 22 C -0.191 4.191 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.224 0.776 27 H 0.229 0.771 28 H 0.154 0.846 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.866 -13.301 7.769 15.668 hybrid contribution -1.198 1.680 0.031 2.064 sum -4.064 -11.621 7.800 14.574 Atomic orbital electron populations 1.69950 1.08065 1.29812 1.31516 1.25930 0.94352 1.01484 0.91541 0.86522 0.81555 0.80880 0.79189 1.19485 1.19921 1.18092 1.19499 1.05425 0.93803 1.30678 0.90036 1.17588 0.89740 0.91848 0.89887 1.20600 1.07042 0.92312 1.04364 1.20320 0.96417 0.98042 0.93760 1.16843 1.07271 0.84059 1.01640 1.42048 1.11404 1.15909 1.61383 1.16056 0.85128 0.80073 0.79217 1.90924 1.16207 1.80455 1.57630 1.45152 1.14596 1.18398 1.61539 1.22262 0.98021 0.83300 0.90142 1.25134 1.05532 0.93492 1.01096 1.89025 1.82929 1.24753 1.08446 1.24824 1.04678 0.92352 1.02797 1.20145 1.00881 0.91508 0.99787 1.20605 1.02564 0.96592 0.99332 0.90645 0.88770 0.87876 0.77628 0.77068 0.84645 0.87569 0.87935 0.87795 0.87433 0.89347 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.30 11.78 55.54 0.65 -18.65 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.09 16 3 Si 0.90 18.11 29.66 -169.99 -5.04 13.07 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.47 -12.27 8.94 -37.86 -0.34 -12.61 16 8 H 0.08 2.08 8.02 -52.48 -0.42 1.66 16 9 C 0.11 2.98 5.57 -106.80 -0.60 2.39 16 10 C -0.22 -5.66 9.74 -39.26 -0.38 -6.05 16 11 C -0.07 -1.56 8.59 -39.79 -0.34 -1.91 16 12 C -0.01 -0.13 6.25 -83.57 -0.52 -0.65 16 13 N -0.66 -11.16 5.30 -14.10 -0.07 -11.23 16 14 C 0.69 11.49 8.37 -86.92 -0.73 10.76 16 15 O -0.58 -12.10 13.56 5.30 0.07 -12.03 16 16 N -0.74 -8.07 5.32 -68.97 -0.37 -8.43 16 17 C 0.17 1.74 3.89 -67.88 -0.26 1.48 16 18 C -0.10 -0.96 7.75 37.18 0.29 -0.68 16 19 S -0.28 -2.79 24.79 -107.50 -2.67 -5.46 16 20 C -0.10 -0.75 7.69 37.18 0.29 -0.47 16 21 C -0.10 -2.31 9.90 -39.79 -0.39 -2.70 16 22 C -0.17 -4.33 8.74 -39.26 -0.34 -4.67 16 23 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 24 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 25 H 0.10 2.44 6.45 -52.49 -0.34 2.11 16 26 H 0.39 5.06 8.84 -40.82 -0.36 4.70 16 27 H 0.40 2.96 8.74 -40.82 -0.36 2.61 16 28 H 0.14 1.68 7.48 -51.92 -0.39 1.29 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.11 2.74 6.53 -52.48 -0.34 2.40 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -30.31 304.97 -10.12 -40.43 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.88 Total: 10.71 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -3.42 Total: -13.01 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.21 Total: -38.31 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.04 Total: 13.07 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.67 Total: -5.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.31 -10.12 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929430513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.365 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds