Wall clock time and date at job start Tue Mar 31 2020 00:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48504 * 109.46912 * 274.98359 * 3 2 1 5 5 H 1.48496 * 109.47386 * 34.98073 * 3 2 1 6 6 H 1.48497 * 109.47327 * 154.98429 * 3 2 1 7 7 C 1.39892 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99716 * 147.60585 * 7 2 1 9 9 C 1.41152 * 120.00299 * 327.60940 * 7 2 1 10 10 C 1.40871 * 120.16287 * 157.91614 * 9 7 2 11 11 C 1.36376 * 119.82385 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.17271 * 0.02937 * 11 10 9 13 13 N 1.39236 * 119.83327 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00550 * 37.78731 * 13 12 11 15 15 O 1.21580 * 119.99884 * 356.69558 * 14 13 12 16 16 N 1.34772 * 120.00085 * 176.69571 * 14 13 12 17 17 C 1.46500 * 120.00110 * 179.97438 * 16 14 13 18 18 C 1.53049 * 113.15210 * 255.37738 * 17 16 14 19 19 S 1.81426 * 89.88624 * 211.84852 * 18 17 16 20 20 C 1.53040 * 113.15658 * 155.00134 * 17 16 14 21 21 C 1.39483 * 120.33030 * 0.24564 * 12 11 10 22 22 C 1.36380 * 120.16682 * 359.44591 * 21 12 11 23 23 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.08789 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.91289 * 180.02562 * 11 10 9 26 26 H 0.97008 * 119.99565 * 217.78350 * 13 12 11 27 27 H 0.97001 * 120.00629 * 0.02562 * 16 14 13 28 28 H 1.09007 * 112.52683 * 25.18648 * 17 16 14 29 29 H 1.09000 * 113.14822 * 327.10784 * 18 17 16 30 30 H 1.08998 * 113.14873 * 96.59208 * 18 17 16 31 31 H 1.09003 * 113.14895 * 263.40768 * 20 17 16 32 32 H 1.09001 * 113.14237 * 32.84730 * 20 17 16 33 33 H 1.08002 * 119.91633 * 179.70911 * 21 12 11 34 34 H 1.08003 * 120.08210 * 180.25374 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4969 2.6201 0.8026 6 1 3.5890 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2844 -0.5006 9 6 1.4674 -2.3386 0.6559 10 6 1.8851 -3.6348 0.2958 11 6 1.3575 -4.7190 0.9331 12 6 0.4063 -4.5468 1.9386 13 7 -0.1281 -5.6587 2.5843 14 6 0.6571 -6.7179 2.8637 15 8 1.8169 -6.7278 2.4988 16 7 0.1568 -7.7659 3.5474 17 6 1.0101 -8.9175 3.8506 18 6 0.7148 -10.1337 2.9697 19 16 1.1767 -11.2322 4.3377 20 6 0.5484 -9.7013 5.0813 21 6 -0.0164 -3.2667 2.2966 22 6 0.5067 -2.1727 1.6726 23 1 -0.4850 0.8400 -0.0004 24 1 2.6212 -3.7697 -0.4828 25 1 1.6771 -5.7134 0.6585 26 1 -1.0656 -5.6709 2.8332 27 1 -0.7686 -7.7582 3.8382 28 1 2.0681 -8.6569 3.8806 29 1 -0.3356 -10.2156 2.6903 30 1 1.3825 -10.2137 2.1118 31 1 1.0766 -9.4191 5.9920 32 1 -0.5341 -9.6991 5.2092 33 1 -0.7568 -3.1414 3.0729 34 1 0.1814 -1.1819 1.9538 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929430513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:05 Heat of formation + Delta-G solvation = -2.515569 kcal Electronic energy + Delta-G solvation = -18401.457692 eV Core-core repulsion = 15425.224133 eV Total energy + Delta-G solvation = -2976.233559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42175 -39.39877 -37.84412 -36.08349 -34.86204 -33.23036 -31.41251 -30.59366 -27.30222 -26.77913 -23.93052 -22.95311 -22.24200 -21.73662 -19.57197 -19.14052 -18.29632 -17.57570 -17.00957 -16.76645 -16.34247 -15.73177 -15.58183 -15.40524 -14.94627 -14.43488 -14.11530 -13.92892 -13.91775 -13.79449 -13.30917 -13.03918 -12.81729 -12.65033 -12.31155 -12.04250 -11.92075 -11.64709 -11.55289 -11.20459 -10.90347 -10.48888 -10.21973 -9.43653 -8.95670 -8.89627 -8.68287 -6.19678 0.74395 0.76847 0.91034 1.17666 1.39526 1.46363 1.57484 1.82218 2.18483 2.22598 2.68547 3.35714 3.40760 3.73080 3.75897 3.86036 4.32682 4.42599 4.48341 4.52970 4.65334 4.77361 4.94269 5.13382 5.19526 5.30755 5.39833 5.49157 5.66107 5.80592 6.06143 6.14338 6.24387 6.40755 6.66159 6.92814 7.03693 7.18919 7.69305 8.23300 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.061445 B = 0.003001 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.585021 B = 9327.518986 C = 9512.619680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.053 3.947 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.083 3.917 10 C -0.245 4.245 11 C -0.077 4.077 12 C 0.013 3.987 13 N -0.654 5.654 14 C 0.695 3.305 15 O -0.623 6.623 16 N -0.712 5.712 17 C 0.165 3.835 18 C -0.092 4.092 19 S -0.316 6.316 20 C -0.072 4.072 21 C -0.100 4.100 22 C -0.189 4.189 23 H 0.294 0.706 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.414 0.586 27 H 0.418 0.582 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -12.405 9.464 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.080 3.920 10 C -0.265 4.265 11 C -0.097 4.097 12 C -0.081 4.081 13 N -0.302 5.302 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.370 5.370 17 C 0.056 3.944 18 C -0.242 4.242 19 S -0.092 6.092 20 C -0.221 4.221 21 C -0.120 4.120 22 C -0.209 4.209 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.251 0.749 27 H 0.256 0.744 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.659 -13.633 9.461 17.236 hybrid contribution -0.713 1.573 -0.432 1.780 sum -5.372 -12.061 9.029 15.995 Atomic orbital electron populations 1.69942 1.09282 1.31369 1.31659 1.26682 0.95075 1.04304 0.90565 0.85402 0.79661 0.76343 0.79612 1.18514 1.18454 1.18663 1.19684 1.05782 0.95431 1.32629 0.90926 1.17894 0.90871 0.92320 0.90930 1.20719 1.07828 0.92832 1.05099 1.20426 0.97259 0.97419 0.94574 1.16859 1.05467 0.85590 1.00181 1.41795 1.12652 1.14733 1.61059 1.16198 0.84404 0.80684 0.79148 1.90911 1.18479 1.81454 1.59445 1.44819 1.15676 1.16765 1.59708 1.22285 0.96848 0.83072 0.92198 1.25103 1.06484 0.92400 1.00197 1.89276 1.83671 1.26206 1.10021 1.24791 1.06494 0.89206 1.01565 1.20422 1.00943 0.90780 0.99866 1.20640 1.03209 0.97215 0.99850 0.89535 0.89253 0.88029 0.74881 0.74404 0.87171 0.85399 0.89223 0.86801 0.84289 0.85711 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.38 11.78 21.82 0.26 -40.12 16 2 C 0.05 2.64 4.77 85.24 0.41 3.05 16 3 Si 0.97 37.38 29.66 68.60 2.03 39.41 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.51 -27.76 8.94 23.39 0.21 -27.55 16 8 H 0.07 3.92 8.02 -2.91 -0.02 3.90 16 9 C 0.08 4.54 5.57 -21.28 -0.12 4.42 16 10 C -0.24 -12.93 9.74 22.48 0.22 -12.71 16 11 C -0.08 -3.72 8.59 22.13 0.19 -3.53 16 12 C 0.01 0.55 6.25 38.57 0.24 0.79 16 13 N -0.65 -20.38 5.30 -316.79 -1.68 -22.06 16 14 C 0.70 21.61 8.37 179.06 1.50 23.11 16 15 O -0.62 -25.98 13.56 -3.97 -0.05 -26.03 16 16 N -0.71 -13.28 5.32 -490.40 -2.61 -15.89 16 17 C 0.16 2.97 3.89 45.02 0.17 3.15 16 18 C -0.09 -1.55 7.75 72.00 0.56 -0.99 16 19 S -0.32 -5.86 24.79 -56.49 -1.40 -7.26 16 20 C -0.07 -0.87 7.69 72.00 0.55 -0.31 16 21 C -0.10 -4.35 9.90 22.14 0.22 -4.13 16 22 C -0.19 -9.67 8.74 22.48 0.20 -9.48 16 23 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 24 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 25 H 0.10 4.91 6.45 -2.91 -0.02 4.89 16 26 H 0.41 9.11 8.84 -92.70 -0.82 8.29 16 27 H 0.42 4.31 8.74 -92.71 -0.81 3.50 16 28 H 0.11 2.66 7.48 -2.38 -0.02 2.64 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 34 H 0.10 5.10 6.53 -2.91 -0.02 5.08 16 Total: -1.00 -68.50 304.97 0.42 -68.08 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.48 Total: 28.04 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.35 Total: -24.18 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -4.03 Total: -78.07 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.40 Total: -7.26 kcal Total: -68.50 0.42 -68.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929430513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.564 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds