Wall clock time and date at job start Tue Mar 31 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48505 * 109.47199 * 240.00445 * 3 2 1 5 5 H 1.48502 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47034 * 120.00404 * 3 2 1 7 7 C 1.38955 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99480 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00222 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00249 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47215 * 179.97438 * 12 10 9 14 14 H 1.08992 * 110.55946 * 307.66544 * 13 12 10 15 15 C 1.51391 * 110.50430 * 70.32801 * 13 12 10 16 16 O 1.21293 * 126.44162 * 298.68436 * 15 13 12 17 17 N 1.34373 * 107.11348 * 118.65434 * 15 13 12 18 18 C 1.39648 * 112.21971 * 359.97438 * 17 15 13 19 19 C 1.38856 * 110.22695 * 0.02562 * 18 17 15 20 20 C 1.37693 * 120.81824 * 179.97438 * 19 18 17 21 21 C 1.38410 * 119.96316 * 359.70429 * 20 19 18 22 22 C 1.38269 * 119.84374 * 0.56849 * 21 20 19 23 23 C 1.38164 * 120.34064 * 359.45152 * 22 21 20 24 24 F 1.35102 * 119.95216 * 180.27594 * 23 22 21 25 25 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99816 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47210 * 59.99710 * 12 10 9 28 28 H 1.09004 * 109.46576 * 299.99653 * 12 10 9 29 29 H 0.97005 * 123.88867 * 180.02562 * 17 15 13 30 30 H 1.08005 * 120.01634 * 179.97438 * 20 19 18 31 31 H 1.07995 * 120.08245 * 180.30304 * 21 20 19 32 32 H 1.08002 * 119.83209 * 179.73228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 6 2.2380 -6.0259 -0.0016 14 1 2.9607 -5.9113 -0.8094 15 6 2.9454 -6.1194 1.3336 16 8 3.6517 -5.2707 1.8357 17 7 2.6432 -7.3191 1.8580 18 6 1.8024 -8.0622 1.0268 19 6 1.5099 -7.3445 -0.1254 20 6 0.6947 -7.8759 -1.0996 21 6 0.1611 -9.1429 -0.9390 22 6 0.4392 -9.8666 0.2058 23 6 1.2564 -9.3362 1.1855 24 9 1.5275 -10.0525 2.2985 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6174 -4.9205 -0.8913 28 1 0.6168 -4.9209 0.8887 29 1 2.9708 -7.6325 2.7156 30 1 0.4754 -7.3062 -1.9905 31 1 -0.4746 -9.5635 -1.7041 32 1 0.0192 -10.8535 0.3329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:38 Heat of formation + Delta-G solvation = -81.570914 kcal Electronic energy + Delta-G solvation = -20807.097809 eV Core-core repulsion = 17261.222977 eV Total energy + Delta-G solvation = -3545.874832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.04963 -41.52443 -38.40048 -37.88730 -35.62333 -34.03787 -33.00025 -31.17213 -29.89021 -29.24267 -26.43650 -24.30669 -22.84377 -21.77373 -20.80530 -19.05434 -18.30762 -17.83114 -17.35070 -16.44605 -16.14155 -15.89725 -15.69521 -15.31200 -15.03399 -14.43325 -14.36093 -13.84058 -13.48219 -13.24088 -13.04016 -12.77379 -12.39545 -12.14540 -11.85773 -11.68774 -11.43089 -11.15655 -10.97851 -10.91953 -10.40022 -10.16058 -9.72554 -9.42493 -8.99904 -8.33276 -8.13599 -7.90852 -6.37062 -3.77087 0.88834 0.90934 2.65123 2.91186 3.23907 3.28933 3.34119 3.43365 3.94251 3.96523 4.10330 4.20666 4.37408 4.62513 4.72253 4.99312 5.07243 5.13857 5.29130 5.37589 5.62607 5.66370 5.73554 5.93920 6.02500 6.11120 6.18693 6.38473 6.46388 6.74463 6.86584 7.60305 8.09672 8.19283 8.65634 9.22726 9.58465 10.10370 10.80816 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.004013 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.288994 B = 6975.939292 C = 7432.542602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.436 3.564 11 O -0.571 6.571 12 C -0.109 4.109 13 C -0.059 4.059 14 H 0.135 0.865 15 C 0.529 3.471 16 O -0.448 6.448 17 N -0.667 5.667 18 C 0.123 3.877 19 C -0.108 4.108 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.121 4.121 23 C 0.068 3.932 24 F -0.142 7.142 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.411 0.589 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -19.453 -1.684 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.221 3.779 11 O -0.454 6.454 12 C -0.150 4.150 13 C -0.081 4.081 14 H 0.152 0.848 15 C 0.315 3.685 16 O -0.316 6.316 17 N -0.312 5.312 18 C 0.023 3.977 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.137 4.137 22 C -0.140 4.140 23 C 0.046 3.954 24 F -0.121 7.121 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.249 0.751 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.449 -18.651 -1.403 18.864 hybrid contribution -0.095 0.418 0.752 0.865 sum -2.544 -18.233 -0.652 18.421 Atomic orbital electron populations 1.69604 1.05906 1.28165 1.50874 1.25241 0.95619 0.99650 0.97441 0.85930 0.78761 0.80527 0.79082 1.19911 1.21017 1.19938 1.19671 0.93371 0.82242 1.47345 0.87955 1.41813 1.09090 1.04532 1.64603 1.19711 0.88453 0.84752 0.84951 1.90603 1.13325 1.86914 1.54580 1.21329 0.97353 0.92348 1.04007 1.20442 0.97873 0.91593 0.98190 0.84770 1.20539 0.80788 0.80078 0.87089 1.90921 1.34664 1.40451 1.65549 1.43934 1.47729 1.17463 1.22096 1.18166 0.94973 0.91872 0.92659 1.19915 1.00802 0.96183 0.94269 1.20431 0.95112 0.95159 0.98220 1.20908 1.01125 0.94209 0.97436 1.20877 0.98512 1.01268 0.93386 1.17012 1.03268 0.88763 0.86380 1.91483 1.92791 1.77451 1.50348 0.91900 0.77515 0.88726 0.90091 0.75094 0.84381 0.84349 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 10 C 0.44 10.31 7.48 -10.99 -0.08 10.23 16 11 O -0.57 -15.60 13.54 -15.55 -0.21 -15.81 16 12 C -0.11 -1.86 5.21 -27.88 -0.15 -2.00 16 13 C -0.06 -0.93 2.59 -92.37 -0.24 -1.17 16 14 H 0.13 2.16 7.90 -51.93 -0.41 1.75 16 15 C 0.53 9.41 7.83 -10.83 -0.08 9.32 16 16 O -0.45 -10.17 15.97 -15.56 -0.25 -10.42 16 17 N -0.67 -9.26 5.89 -9.64 -0.06 -9.31 16 18 C 0.12 1.53 7.09 -83.59 -0.59 0.94 16 19 C -0.11 -1.32 5.67 -104.38 -0.59 -1.91 16 20 C -0.07 -0.65 10.03 -39.72 -0.40 -1.05 16 21 C -0.12 -0.89 10.06 -39.51 -0.40 -1.29 16 22 C -0.12 -1.02 9.99 -39.60 -0.40 -1.41 16 23 C 0.07 0.74 7.33 -39.13 -0.29 0.46 16 24 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 29 H 0.41 4.92 8.96 -40.82 -0.37 4.55 16 30 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -34.09 291.01 -6.63 -40.72 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -2.72 Total: 10.17 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.46 Total: 4.05 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.61 Total: -47.95 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.46 Total: -26.24 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.09 -6.63 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.853 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds