Wall clock time and date at job start Tue Mar 31 2020 00:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48505 * 109.47199 * 240.00445 * 3 2 1 5 5 H 1.48502 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47034 * 120.00404 * 3 2 1 7 7 C 1.38955 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99480 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00222 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00249 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47215 * 179.97438 * 12 10 9 14 14 H 1.08992 * 110.55946 * 307.66544 * 13 12 10 15 15 C 1.51391 * 110.50430 * 70.32801 * 13 12 10 16 16 O 1.21293 * 126.44162 * 298.68436 * 15 13 12 17 17 N 1.34373 * 107.11348 * 118.65434 * 15 13 12 18 18 C 1.39648 * 112.21971 * 359.97438 * 17 15 13 19 19 C 1.38856 * 110.22695 * 0.02562 * 18 17 15 20 20 C 1.37693 * 120.81824 * 179.97438 * 19 18 17 21 21 C 1.38410 * 119.96316 * 359.70429 * 20 19 18 22 22 C 1.38269 * 119.84374 * 0.56849 * 21 20 19 23 23 C 1.38164 * 120.34064 * 359.45152 * 22 21 20 24 24 F 1.35102 * 119.95216 * 180.27594 * 23 22 21 25 25 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99816 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47210 * 59.99710 * 12 10 9 28 28 H 1.09004 * 109.46576 * 299.99653 * 12 10 9 29 29 H 0.97005 * 123.88867 * 180.02562 * 17 15 13 30 30 H 1.08005 * 120.01634 * 179.97438 * 20 19 18 31 31 H 1.07995 * 120.08245 * 180.30304 * 21 20 19 32 32 H 1.08002 * 119.83209 * 179.73228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 6 2.2380 -6.0259 -0.0016 14 1 2.9607 -5.9113 -0.8094 15 6 2.9454 -6.1194 1.3336 16 8 3.6517 -5.2707 1.8357 17 7 2.6432 -7.3191 1.8580 18 6 1.8024 -8.0622 1.0268 19 6 1.5099 -7.3445 -0.1254 20 6 0.6947 -7.8759 -1.0996 21 6 0.1611 -9.1429 -0.9390 22 6 0.4392 -9.8666 0.2058 23 6 1.2564 -9.3362 1.1855 24 9 1.5275 -10.0525 2.2985 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6174 -4.9205 -0.8913 28 1 0.6168 -4.9209 0.8887 29 1 2.9708 -7.6325 2.7156 30 1 0.4754 -7.3062 -1.9905 31 1 -0.4746 -9.5635 -1.7041 32 1 0.0192 -10.8535 0.3329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:36 Heat of formation + Delta-G solvation = -105.502672 kcal Electronic energy + Delta-G solvation = -20808.135568 eV Core-core repulsion = 17261.222977 eV Total energy + Delta-G solvation = -3546.912591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89377 -42.64613 -39.98018 -39.32025 -36.73951 -36.01633 -34.32535 -33.21012 -30.83419 -30.19966 -27.93395 -26.10525 -23.67887 -22.70734 -22.19018 -20.78657 -19.86247 -19.30454 -18.39687 -17.65814 -17.37235 -17.18056 -16.75661 -16.55128 -16.36598 -16.01354 -15.70692 -15.58194 -14.84552 -14.54717 -14.11595 -13.99622 -13.67530 -13.44139 -13.35029 -12.97023 -12.87452 -12.74698 -12.41788 -12.21629 -12.08681 -11.91865 -11.48896 -11.09176 -10.32627 -9.97578 -9.75156 -9.08713 -8.44985 -5.92746 0.02775 0.14404 1.39387 1.40084 1.41010 1.51825 1.84556 2.09472 2.30626 2.62499 2.97382 3.04806 3.22479 3.25324 3.49899 3.83536 3.89464 4.01395 4.18303 4.37761 4.49969 4.62833 4.66348 4.83351 4.93349 5.04079 5.32396 5.42670 5.45034 5.53397 5.68137 5.95726 6.01097 6.62065 6.92561 7.15262 7.58231 8.15868 8.72442 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.004013 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.288994 B = 6975.939292 C = 7432.542602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.278 1.278 7 C -0.333 4.333 8 H 0.074 0.926 9 N -0.575 5.575 10 C 0.432 3.568 11 O -0.611 6.611 12 C -0.095 4.095 13 C -0.056 4.056 14 H 0.124 0.876 15 C 0.520 3.480 16 O -0.516 6.516 17 N -0.658 5.658 18 C 0.094 3.906 19 C -0.114 4.114 20 C -0.066 4.066 21 C -0.096 4.096 22 C -0.111 4.111 23 C 0.061 3.939 24 F -0.148 7.148 25 H 0.277 0.723 26 H 0.397 0.603 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.416 0.584 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -21.466 -3.209 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.462 4.462 8 H 0.092 0.908 9 N -0.213 5.213 10 C 0.219 3.781 11 O -0.497 6.497 12 C -0.135 4.135 13 C -0.078 4.078 14 H 0.142 0.858 15 C 0.308 3.692 16 O -0.389 6.389 17 N -0.302 5.302 18 C -0.004 4.004 19 C -0.117 4.117 20 C -0.084 4.084 21 C -0.114 4.114 22 C -0.130 4.130 23 C 0.039 3.961 24 F -0.127 7.127 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.153 0.847 28 H 0.110 0.890 29 H 0.255 0.745 30 H 0.180 0.820 31 H 0.198 0.802 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.847 -20.740 -2.944 21.501 hybrid contribution 0.570 0.848 1.187 1.566 sum -4.277 -19.891 -1.757 20.422 Atomic orbital electron populations 1.69657 1.06671 1.29262 1.50553 1.25978 0.96554 1.02193 0.96416 0.85042 0.77831 0.76945 0.78825 1.19496 1.19183 1.20316 1.19601 0.92574 0.84234 1.49840 0.90752 1.41883 1.09230 1.04608 1.65583 1.20870 0.88380 0.86348 0.82453 1.90580 1.15627 1.87890 1.55585 1.21269 0.97241 0.88680 1.06356 1.20291 0.97686 0.93246 0.96574 0.85821 1.20940 0.80087 0.80307 0.87886 1.90873 1.37786 1.42899 1.67391 1.43719 1.47504 1.16578 1.22423 1.18378 0.96182 0.92975 0.92871 1.19717 1.02246 0.94261 0.95502 1.20816 0.93663 0.96021 0.97927 1.21408 0.99657 0.92839 0.97512 1.21336 0.96786 1.02413 0.92461 1.17307 1.03735 0.88135 0.86928 1.91472 1.92944 1.77415 1.50889 0.91315 0.76934 0.84705 0.88983 0.74484 0.81951 0.80191 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.46 13.05 21.67 0.28 -50.18 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.33 -19.57 9.68 84.04 0.81 -18.76 16 8 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -30.33 5.29 -306.99 -1.62 -31.95 16 10 C 0.43 21.06 7.48 87.66 0.66 21.72 16 11 O -0.61 -35.19 13.54 17.12 0.23 -34.96 16 12 C -0.10 -3.17 5.21 29.85 0.16 -3.01 16 13 C -0.06 -1.76 2.59 -11.93 -0.03 -1.79 16 14 H 0.12 4.09 7.90 -2.39 -0.02 4.07 16 15 C 0.52 19.41 7.83 87.94 0.69 20.10 16 16 O -0.52 -25.20 15.97 17.11 0.27 -24.93 16 17 N -0.66 -18.72 5.89 -303.03 -1.78 -20.51 16 18 C 0.09 2.21 7.09 38.35 0.27 2.49 16 19 C -0.11 -2.54 5.67 -19.71 -0.11 -2.65 16 20 C -0.07 -0.92 10.03 22.18 0.22 -0.70 16 21 C -0.10 -0.88 10.06 22.32 0.22 -0.66 16 22 C -0.11 -1.32 9.99 22.26 0.22 -1.10 16 23 C 0.06 1.17 7.33 22.56 0.17 1.34 16 24 F -0.15 -3.11 17.27 44.97 0.78 -2.34 16 25 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 27 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 29 H 0.42 10.47 8.96 -92.70 -0.83 9.64 16 30 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -78.95 291.01 3.57 -75.39 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.36 Total: 26.38 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 3.74 Total: 16.79 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.12 Total: -102.64 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: 0.51 Total: -59.89 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -78.95 3.57 -75.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.117 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds