Wall clock time and date at job start Tue Mar 31 2020 00:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 12 12 C 1.34776 * 120.00056 * 205.00172 * 11 9 7 13 13 O 1.21591 * 119.99915 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00509 * 180.02562 * 12 11 9 15 15 C 1.40193 * 120.00386 * 179.97438 * 14 12 11 16 16 C 1.40403 * 125.96978 * 359.70999 * 15 14 12 17 17 C 1.35248 * 107.86399 * 179.82986 * 16 15 14 18 18 N 1.34961 * 107.85980 * 0.42816 * 17 16 15 19 19 H 0.96999 * 125.97666 * 179.70051 * 18 17 16 20 20 N 1.31205 * 125.97208 * 180.02562 * 15 14 12 21 21 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 22 22 F 1.39901 * 109.47523 * 60.00129 * 21 9 7 23 23 F 1.39899 * 109.47041 * 179.97438 * 21 9 7 24 24 F 1.39900 * 109.47321 * 299.99924 * 21 9 7 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00221 * 24.99650 * 11 9 7 27 27 H 0.97003 * 119.99768 * 359.97438 * 14 12 11 28 28 H 1.08001 * 126.07054 * 0.02562 * 16 15 14 29 29 H 1.08002 * 126.06841 * 180.18008 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 2.2028 -3.6127 -0.0102 12 6 1.8367 -4.8101 -0.5089 13 8 0.7162 -4.9662 -0.9543 14 7 2.7123 -5.8347 -0.5130 15 6 2.3313 -7.0804 -1.0312 16 6 1.0746 -7.4002 -1.5695 17 6 1.1084 -8.6941 -1.9618 18 7 2.3340 -9.1814 -1.6759 19 1 2.6411 -10.0860 -1.8443 20 7 3.0849 -8.1527 -1.0927 21 6 0.3713 -2.5857 1.2434 22 9 -0.5378 -1.5224 1.2482 23 9 -0.3288 -3.7970 1.2377 24 9 1.1755 -2.5168 2.3861 25 1 -0.4850 0.8401 -0.0004 26 1 3.0967 -3.4882 0.3454 27 1 3.6062 -5.7103 -0.1573 28 1 0.2316 -6.7308 -1.6577 29 1 0.2971 -9.2413 -2.4187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932904841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:09 Heat of formation + Delta-G solvation = -100.529374 kcal Electronic energy + Delta-G solvation = -22206.180292 eV Core-core repulsion = 18137.546580 eV Total energy + Delta-G solvation = -4068.633712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.37639 -48.01030 -47.68743 -42.28783 -40.82625 -36.75678 -35.79783 -34.47131 -31.62939 -30.84401 -29.82785 -26.56866 -24.27321 -22.79224 -22.51153 -21.34234 -19.88710 -18.92105 -18.84250 -18.72418 -18.52707 -17.94087 -17.04118 -16.62446 -16.45297 -15.85808 -15.33398 -15.08407 -14.91849 -14.57544 -14.41927 -14.33675 -14.24569 -13.99829 -13.88142 -13.82309 -13.06040 -12.78933 -12.60267 -12.20234 -12.11994 -11.83266 -11.58799 -11.13502 -10.66030 -10.19447 -9.83354 -9.28874 -8.19098 -6.49820 0.89199 1.14729 1.50428 1.51810 1.60549 1.65006 2.26012 2.31035 2.41707 2.59641 2.97087 3.18261 3.80905 3.88621 4.00310 4.21576 4.27252 4.70581 4.88889 4.91683 5.18018 5.41283 5.53530 5.66368 5.75868 5.92160 6.50002 6.55499 6.71697 7.06937 7.20509 7.47964 8.73543 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.005101 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.850838 B = 5487.784210 C = 5850.626197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.017 3.983 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.094 0.906 9 C 0.272 3.728 10 H 0.055 0.945 11 N -0.710 5.710 12 C 0.706 3.294 13 O -0.592 6.592 14 N -0.639 5.639 15 C 0.305 3.695 16 C -0.311 4.311 17 C 0.098 3.902 18 N -0.458 5.458 19 H 0.459 0.541 20 N -0.350 5.350 21 C 0.412 3.588 22 F -0.150 7.150 23 F -0.218 7.218 24 F -0.204 7.204 25 H 0.269 0.731 26 H 0.413 0.587 27 H 0.423 0.577 28 H 0.148 0.852 29 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 -12.608 -2.185 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.600 4.600 8 H 0.112 0.888 9 C 0.164 3.836 10 H 0.072 0.928 11 N -0.364 5.364 12 C 0.406 3.594 13 O -0.469 6.469 14 N -0.291 5.291 15 C 0.049 3.951 16 C -0.342 4.342 17 C -0.051 4.051 18 N -0.171 5.171 19 H 0.307 0.693 20 N -0.183 5.183 21 C 0.356 3.644 22 F -0.131 7.131 23 F -0.200 7.200 24 F -0.186 7.186 25 H 0.079 0.921 26 H 0.250 0.750 27 H 0.261 0.739 28 H 0.165 0.835 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.181 -13.021 -2.294 14.201 hybrid contribution 0.018 0.932 0.492 1.054 sum 5.200 -12.089 -1.802 13.283 Atomic orbital electron populations 1.70517 1.07418 1.28279 1.44468 1.25964 0.95888 1.03549 0.93456 0.85218 0.77992 0.76836 0.79320 1.18755 1.21074 1.19101 1.21194 0.94660 0.88152 1.55982 0.88814 1.19272 0.88284 0.85995 0.90017 0.92777 1.44947 1.17836 1.08639 1.65023 1.15895 0.83882 0.80555 0.79115 1.90844 1.20793 1.82559 1.52659 1.41429 1.17075 1.06693 1.63921 1.19104 0.93546 0.85800 0.96657 1.21971 0.99442 0.98508 1.14295 1.23152 0.90100 0.93948 0.97884 1.45851 1.09596 1.12258 1.49347 0.69293 1.77198 1.18827 0.95917 1.26318 1.23321 0.80897 0.72442 0.87745 1.93376 1.68909 1.54518 1.96323 1.93071 1.81542 1.48357 1.96990 1.92988 1.74151 1.96175 1.55242 0.92103 0.74989 0.73913 0.83466 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.65 9.51 21.45 0.20 -47.44 15 2 C 0.02 0.87 5.20 84.66 0.44 1.31 15 3 Si 0.98 39.90 29.54 68.60 2.03 41.92 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.29 -11.57 7.11 99.48 0.71 -10.87 15 6 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 7 C -0.56 -27.83 8.46 25.60 0.22 -27.62 15 8 H 0.09 4.23 7.74 -2.91 -0.02 4.21 15 9 C 0.27 13.38 2.21 44.25 0.10 13.48 15 10 H 0.05 3.05 7.58 -2.39 -0.02 3.03 15 11 N -0.71 -28.36 4.99 -461.43 -2.30 -30.66 15 12 C 0.71 28.39 8.07 179.05 1.44 29.83 15 13 O -0.59 -27.96 12.04 -4.00 -0.05 -28.01 15 14 N -0.64 -20.68 5.45 -321.23 -1.75 -22.43 15 15 C 0.31 9.95 8.11 133.32 1.08 11.03 15 16 C -0.31 -9.82 9.61 22.11 0.21 -9.61 15 17 C 0.10 1.95 11.98 83.52 1.00 2.95 15 18 N -0.46 -8.80 7.35 -57.62 -0.42 -9.22 15 19 H 0.46 4.70 8.96 -213.33 -1.91 2.79 15 20 N -0.35 -9.82 12.72 -54.44 -0.69 -10.52 15 21 C 0.41 21.14 2.81 71.98 0.20 21.34 15 22 F -0.15 -8.36 12.93 44.97 0.58 -7.78 15 23 F -0.22 -11.18 15.67 44.97 0.70 -10.47 15 24 F -0.20 -9.90 16.94 44.97 0.76 -9.13 15 25 H 0.27 13.97 8.31 -92.70 -0.77 13.20 15 26 H 0.41 13.60 8.55 -92.71 -0.79 12.81 15 27 H 0.42 10.75 8.84 -92.71 -0.82 9.93 15 28 H 0.15 5.55 5.91 -2.91 -0.02 5.54 15 29 H 0.23 2.10 8.06 -2.91 -0.02 2.08 15 Total: -1.00 -69.07 268.86 1.50 -67.57 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -2.26 Total: 23.46 kcal Atomic # 6 Polarization: 38.02 SS G_CDS: 4.70 Total: 42.71 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -4.97 Total: -120.27 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.01 kcal Atomic # 9 Polarization: -29.43 SS G_CDS: 2.05 Total: -27.38 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Total: -69.07 1.50 -67.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932904841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.962 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds