Wall clock time and date at job start Tue Mar 31 2020 00:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47223 * 89.99697 * 3 2 1 5 5 H 1.48504 * 109.46769 * 209.99581 * 3 2 1 6 6 H 1.48498 * 109.47223 * 329.99495 * 3 2 1 7 7 C 1.37879 * 119.99557 * 180.26791 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.76155 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76746 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21591 * 119.99595 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99792 * 179.97438 * 12 11 9 15 15 C 1.40193 * 119.99645 * 180.02562 * 14 12 11 16 16 C 1.40405 * 125.97553 * 359.71691 * 15 14 12 17 17 C 1.35240 * 107.86803 * 179.82744 * 16 15 14 18 18 N 1.34964 * 107.85933 * 0.42896 * 17 16 15 19 19 H 0.97000 * 125.98050 * 179.70511 * 18 17 16 20 20 N 1.31209 * 125.97240 * 180.02562 * 15 14 12 21 21 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 22 22 F 1.39901 * 109.46911 * 54.83413 * 21 9 7 23 23 F 1.39896 * 109.47342 * 174.83935 * 21 9 7 24 24 F 1.39903 * 109.47058 * 294.83544 * 21 9 7 25 25 H 0.97006 * 120.00501 * 175.53660 * 1 2 3 26 26 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 27 27 H 0.96998 * 120.00223 * 359.97438 * 14 12 11 28 28 H 1.07998 * 126.06097 * 0.02562 * 16 15 14 29 29 H 1.08001 * 126.07376 * 180.17919 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0056 8 1 3.0318 -1.2261 0.3258 9 6 1.3244 -2.4546 -0.4742 10 1 0.4045 -2.6029 0.0914 11 7 2.2163 -3.5977 -0.2643 12 6 1.7028 -4.8354 -0.1195 13 8 0.4994 -5.0033 -0.1636 14 7 2.5234 -5.8871 0.0730 15 6 1.9894 -7.1746 0.2231 16 6 0.6262 -7.5099 0.1996 17 6 0.5247 -8.8471 0.3747 18 7 1.7725 -9.3422 0.5139 19 1 2.0035 -10.2733 0.6574 20 7 2.6758 -8.2761 0.4156 21 6 0.9936 -2.3324 -1.9630 22 9 2.1577 -2.0251 -2.6756 23 9 0.4700 -3.5445 -2.4254 24 9 0.0507 -1.3159 -2.1493 25 1 -0.4851 -0.8375 -0.0654 26 1 3.1764 -3.4637 -0.2295 27 1 3.4835 -5.7532 0.1071 28 1 -0.1954 -6.8224 0.0626 29 1 -0.3922 -9.4171 0.4025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932904864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:15 Heat of formation + Delta-G solvation = -120.780651 kcal Electronic energy + Delta-G solvation = -22215.207446 eV Core-core repulsion = 18145.695573 eV Total energy + Delta-G solvation = -4069.511873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.77493 -48.30379 -48.25267 -42.34987 -40.93239 -37.02886 -35.89318 -34.60693 -31.63110 -30.88696 -29.71612 -26.49619 -24.41099 -22.85663 -22.78603 -21.41562 -20.05659 -19.37361 -19.05587 -18.96475 -18.80470 -18.37963 -17.15476 -16.59583 -16.16966 -15.66196 -15.44690 -15.30076 -15.17209 -14.88693 -14.74105 -14.58297 -14.45753 -14.41886 -14.27426 -13.90602 -13.34211 -13.00703 -12.56325 -12.19926 -11.89955 -11.87645 -11.42226 -11.24860 -10.45094 -10.34888 -9.88615 -9.35344 -8.83122 -6.59931 0.83997 1.05063 1.55991 1.58801 1.67714 1.85989 2.08641 2.23679 2.35042 2.50866 2.93321 3.05021 3.45005 3.60227 3.73238 3.97172 4.21986 4.55124 4.70794 4.86046 5.07456 5.25218 5.36748 5.65722 5.84113 6.05364 6.32199 6.44839 6.65854 6.96641 7.17058 7.36767 8.52931 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.033040 B = 0.005070 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.257385 B = 5521.648034 C = 5786.487851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.004 4.004 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.641 4.641 8 H 0.088 0.912 9 C 0.259 3.741 10 H 0.052 0.948 11 N -0.705 5.705 12 C 0.707 3.293 13 O -0.592 6.592 14 N -0.637 5.637 15 C 0.304 3.696 16 C -0.312 4.312 17 C 0.099 3.901 18 N -0.457 5.457 19 H 0.459 0.541 20 N -0.348 5.348 21 C 0.414 3.586 22 F -0.188 7.188 23 F -0.203 7.203 24 F -0.189 7.189 25 H 0.265 0.735 26 H 0.415 0.585 27 H 0.424 0.576 28 H 0.148 0.852 29 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -13.806 0.607 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.211 4.211 3 Si 0.936 3.064 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.212 1.212 7 C -0.677 4.677 8 H 0.106 0.894 9 C 0.150 3.850 10 H 0.069 0.931 11 N -0.360 5.360 12 C 0.407 3.593 13 O -0.469 6.469 14 N -0.290 5.290 15 C 0.048 3.952 16 C -0.343 4.343 17 C -0.050 4.050 18 N -0.169 5.169 19 H 0.308 0.692 20 N -0.181 5.181 21 C 0.358 3.642 22 F -0.170 7.170 23 F -0.185 7.185 24 F -0.170 7.170 25 H 0.076 0.924 26 H 0.252 0.748 27 H 0.262 0.738 28 H 0.165 0.835 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.029 -12.758 0.727 13.733 hybrid contribution -0.049 -1.523 -0.521 1.611 sum 4.981 -14.282 0.206 15.127 Atomic orbital electron populations 1.70836 1.08246 1.31618 1.40797 1.27367 0.95949 1.06459 0.91310 0.82972 0.74624 0.70648 0.78176 1.19191 1.18700 1.21190 1.21962 1.02286 0.91556 1.51883 0.89418 1.19299 0.93733 0.86773 0.85162 0.93061 1.44781 1.11153 1.03906 1.76122 1.15881 0.84984 0.80724 0.77753 1.90842 1.14164 1.84113 1.57790 1.41380 1.10567 1.02287 1.74722 1.19094 0.92537 0.84899 0.98697 1.21960 0.96063 0.97037 1.19195 1.23159 0.91075 0.93767 0.96990 1.45859 1.03293 1.09246 1.58552 0.69231 1.77202 1.15331 0.93513 1.32060 1.23076 0.73689 0.72249 0.95206 1.93033 1.49445 1.93110 1.81373 1.93101 1.87431 1.46582 1.91406 1.93126 1.66359 1.61302 1.96251 0.92439 0.74789 0.73844 0.83486 0.75560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.17 12.43 21.45 0.27 -49.90 15 2 C 0.00 -0.22 4.72 84.66 0.40 0.18 15 3 Si 1.12 45.62 29.95 68.60 2.05 47.68 15 4 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.29 -11.98 7.11 99.48 0.71 -11.28 15 7 C -0.64 -31.89 8.21 25.60 0.21 -31.68 15 8 H 0.09 4.06 7.81 -2.91 -0.02 4.04 15 9 C 0.26 12.52 1.92 44.24 0.09 12.60 15 10 H 0.05 2.83 6.61 -2.39 -0.02 2.81 15 11 N -0.71 -27.88 5.03 -461.41 -2.32 -30.20 15 12 C 0.71 28.04 7.95 179.05 1.42 29.46 15 13 O -0.59 -27.51 12.08 -4.00 -0.05 -27.56 15 14 N -0.64 -20.35 5.46 -321.23 -1.75 -22.11 15 15 C 0.30 9.77 8.11 133.31 1.08 10.86 15 16 C -0.31 -9.68 9.61 22.11 0.21 -9.47 15 17 C 0.10 1.93 11.98 83.52 1.00 2.93 15 18 N -0.46 -8.60 7.35 -57.63 -0.42 -9.02 15 19 H 0.46 4.53 8.96 -213.34 -1.91 2.62 15 20 N -0.35 -9.65 12.72 -54.43 -0.69 -10.34 15 21 C 0.41 20.37 2.82 71.98 0.20 20.57 15 22 F -0.19 -8.76 16.87 44.97 0.76 -8.00 15 23 F -0.20 -9.91 15.54 44.97 0.70 -9.21 15 24 F -0.19 -10.05 14.13 44.97 0.64 -9.41 15 25 H 0.26 15.53 6.04 -92.70 -0.56 14.97 15 26 H 0.42 13.60 8.54 -92.71 -0.79 12.81 15 27 H 0.42 10.62 8.84 -92.71 -0.82 9.80 15 28 H 0.15 5.46 5.91 -2.91 -0.02 5.44 15 29 H 0.23 2.01 8.06 -2.91 -0.02 1.99 15 Total: -1.00 -69.74 268.97 1.75 -67.98 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -2.04 Total: 24.63 kcal Atomic # 6 Polarization: 30.83 SS G_CDS: 4.62 Total: 35.45 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.92 Total: -121.57 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 9 Polarization: -28.72 SS G_CDS: 2.09 Total: -26.62 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.05 Total: 47.68 kcal Total: -69.74 1.75 -67.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932904864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.796 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds