Wall clock time and date at job start Tue Mar 31 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48505 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47548 * 300.00029 * 3 2 1 6 6 H 1.48507 * 109.47147 * 60.00375 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21708 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.46586 * 120.00444 * 180.02562 * 19 18 16 22 22 C 1.36647 * 125.46156 * 179.72007 * 21 19 18 23 23 C 1.37474 * 113.29787 * 179.83784 * 22 21 19 24 24 C 1.33817 * 115.09979 * 0.45412 * 23 22 21 25 25 S 1.70617 * 110.95500 * 359.74709 * 24 23 22 26 26 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 27 27 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 28 28 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 29 29 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 30 30 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 31 31 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 32 32 H 1.07998 * 123.35060 * 0.02562 * 22 21 19 33 33 H 1.07997 * 122.45028 * 180.22738 * 23 22 21 34 34 H 1.07999 * 124.52578 * 179.76995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6955 21 6 -1.9620 -8.4760 -1.2761 22 6 -2.4207 -9.6539 -0.7569 23 6 -2.9639 -10.4902 -1.7031 24 6 -2.9430 -10.0197 -2.9557 25 16 -2.2328 -8.4695 -3.0134 26 1 -0.4850 0.8400 0.0004 27 1 -0.7146 -1.7148 -0.3630 28 1 -0.5197 -2.8483 1.0094 29 1 1.8513 -4.1847 1.0018 30 1 2.9071 -3.7537 -0.3789 31 1 -1.0306 -6.1896 -2.0959 32 1 -2.3649 -9.9017 0.2928 33 1 -3.3742 -11.4577 -1.4543 34 1 -3.3250 -10.5503 -3.8153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958140194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:59 Heat of formation + Delta-G solvation = 66.693645 kcal Electronic energy + Delta-G solvation = -18392.349918 eV Core-core repulsion = 15419.117495 eV Total energy + Delta-G solvation = -2973.232423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88879 -38.45324 -37.44683 -34.41339 -32.69780 -30.54887 -29.63545 -27.05876 -25.97051 -24.97173 -22.39132 -20.96388 -20.47336 -19.40458 -19.20281 -18.49390 -16.93265 -16.41490 -15.94302 -15.41111 -14.95605 -14.67455 -13.95658 -13.58058 -13.28849 -13.10348 -13.02269 -12.73200 -12.56172 -12.19863 -11.50656 -11.33955 -11.25240 -11.11279 -10.86576 -10.35176 -10.20276 -10.06223 -10.02713 -9.68122 -9.20670 -9.16930 -8.88510 -8.82103 -8.36361 -6.92798 -5.66950 -3.10993 0.27352 1.20289 1.60688 2.17130 3.04409 3.11684 3.39428 3.44572 3.47137 4.33464 4.46605 4.63040 4.74329 5.03588 5.15404 5.20920 5.35310 5.41761 5.56565 5.67977 5.79484 5.88800 5.90752 6.04426 6.13966 6.24992 6.53798 6.67149 6.78567 6.88602 7.31680 7.48141 7.54549 7.78755 8.15818 8.26811 9.11828 9.75969 10.47032 11.36567 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.049402 B = 0.003227 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.641446 B = 8675.247315 C = 8843.384266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.170 4.170 12 H 0.102 0.898 13 C -0.184 4.184 14 H 0.103 0.897 15 C 0.160 3.840 16 C 0.092 3.908 17 H 0.133 0.867 18 N -0.692 5.692 19 C 0.591 3.409 20 O -0.527 6.527 21 C -0.259 4.259 22 C -0.059 4.059 23 C -0.149 4.149 24 C -0.234 4.234 25 S 0.200 5.800 26 H 0.253 0.747 27 H 0.137 0.863 28 H 0.019 0.981 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.396 0.604 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -19.005 -7.741 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.191 4.191 12 H 0.120 0.880 13 C -0.206 4.206 14 H 0.121 0.879 15 C 0.034 3.966 16 C -0.014 4.014 17 H 0.151 0.849 18 N -0.340 5.340 19 C 0.376 3.624 20 O -0.405 6.405 21 C -0.380 4.380 22 C -0.093 4.093 23 C -0.180 4.180 24 C -0.371 4.371 25 S 0.467 5.533 26 H 0.064 0.936 27 H 0.154 0.846 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.230 0.770 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.890 -17.749 -8.043 20.357 hybrid contribution -0.018 -0.462 0.366 0.590 sum -5.907 -18.211 -7.677 20.627 Atomic orbital electron populations 1.69491 1.04961 1.24662 1.58044 1.24761 0.95711 0.97717 1.02784 0.85936 0.78572 0.83370 0.77241 1.20545 1.21777 1.21728 1.19167 0.90438 0.82146 1.42430 0.90163 1.46141 1.01332 0.99403 1.85649 1.22566 0.85427 0.95127 0.93708 1.24664 0.99761 0.91671 1.03034 0.87980 1.24401 0.91158 1.02623 1.02420 0.87931 1.21075 0.94794 0.85779 0.94995 1.21971 0.97760 0.85338 0.96305 0.84912 1.45277 1.60849 1.16990 1.10872 1.16905 0.77812 0.80847 0.86793 1.90837 1.56307 1.79802 1.13582 1.24732 1.14130 1.01452 0.97671 1.20829 0.95547 0.91224 1.01654 1.20060 1.04041 1.02209 0.91735 1.25326 1.07958 1.01467 1.02381 1.83091 1.53912 1.13288 1.03015 0.93618 0.84559 0.96324 0.95463 0.92967 0.77010 0.82787 0.83703 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.12 55.49 0.56 -26.01 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.21 -5.94 10.42 -15.06 -0.16 -6.09 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.46 3.46 -165.73 -0.57 -16.04 16 10 C 0.16 3.77 6.43 -0.29 0.00 3.77 16 11 C -0.17 -3.30 6.96 -89.22 -0.62 -3.92 16 12 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 13 C -0.18 -3.38 7.05 -89.24 -0.63 -4.01 16 14 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 15 C 0.16 3.42 7.05 -2.43 -0.02 3.40 16 16 C 0.09 1.60 5.97 -67.94 -0.41 1.20 16 17 H 0.13 2.58 7.40 -51.93 -0.38 2.19 16 18 N -0.69 -10.09 5.56 -55.15 -0.31 -10.40 16 19 C 0.59 9.07 7.78 -12.90 -0.10 8.97 16 20 O -0.53 -9.97 16.41 5.18 0.09 -9.88 16 21 C -0.26 -3.12 6.45 -36.79 -0.24 -3.36 16 22 C -0.06 -0.63 10.01 -40.44 -0.40 -1.04 16 23 C -0.15 -1.22 10.15 -41.41 -0.42 -1.64 16 24 C -0.23 -1.75 10.92 29.18 0.32 -1.43 16 25 S 0.20 1.74 22.16 -107.50 -2.38 -0.64 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.14 3.67 5.34 -51.93 -0.28 3.39 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.40 4.77 7.94 -40.82 -0.32 4.45 16 32 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -31.70 304.98 -9.73 -41.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.91 Total: 4.70 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.77 Total: -4.67 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.32 Total: -52.45 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.38 Total: -0.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.70 -9.73 -41.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958140194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.122 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds