Wall clock time and date at job start Tue Mar 31 2020 00:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48505 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47548 * 300.00029 * 3 2 1 6 6 H 1.48507 * 109.47147 * 60.00375 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21708 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.46586 * 120.00444 * 180.02562 * 19 18 16 22 22 C 1.36647 * 125.46156 * 179.72007 * 21 19 18 23 23 C 1.37474 * 113.29787 * 179.83784 * 22 21 19 24 24 C 1.33817 * 115.09979 * 0.45412 * 23 22 21 25 25 S 1.70617 * 110.95500 * 359.74709 * 24 23 22 26 26 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 27 27 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 28 28 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 29 29 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 30 30 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 31 31 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 32 32 H 1.07998 * 123.35060 * 0.02562 * 22 21 19 33 33 H 1.07997 * 122.45028 * 180.22738 * 23 22 21 34 34 H 1.07999 * 124.52578 * 179.76995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6955 21 6 -1.9620 -8.4760 -1.2761 22 6 -2.4207 -9.6539 -0.7569 23 6 -2.9639 -10.4902 -1.7031 24 6 -2.9430 -10.0197 -2.9557 25 16 -2.2328 -8.4695 -3.0134 26 1 -0.4850 0.8400 0.0004 27 1 -0.7146 -1.7148 -0.3630 28 1 -0.5197 -2.8483 1.0094 29 1 1.8513 -4.1847 1.0018 30 1 2.9071 -3.7537 -0.3789 31 1 -1.0306 -6.1896 -2.0959 32 1 -2.3649 -9.9017 0.2928 33 1 -3.3742 -11.4577 -1.4543 34 1 -3.3250 -10.5503 -3.8153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958140194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:57 Heat of formation + Delta-G solvation = 46.321657 kcal Electronic energy + Delta-G solvation = -18393.233314 eV Core-core repulsion = 15419.117495 eV Total energy + Delta-G solvation = -2974.115818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.18578 -39.84988 -38.34131 -36.03939 -34.40696 -32.22565 -30.65343 -28.84444 -27.70773 -26.01377 -23.77010 -22.32439 -22.05262 -20.83637 -20.23434 -19.52524 -18.90251 -17.70317 -16.86676 -16.74030 -16.34828 -16.13415 -15.51555 -15.01053 -14.78228 -14.58974 -13.92316 -13.83138 -13.69253 -13.31644 -13.24318 -13.05125 -12.99252 -12.75209 -12.10169 -11.98131 -11.94997 -11.76522 -11.67996 -11.32204 -10.97933 -10.70946 -10.03405 -9.71376 -9.52205 -8.97126 -7.76044 -5.23553 -0.51448 0.47641 0.93235 1.38292 1.49112 1.49964 1.60359 1.83052 2.05661 2.49791 2.83832 3.32965 3.50752 3.68552 3.81602 3.87482 4.11815 4.14974 4.34294 4.35381 4.52171 4.55655 4.74449 4.87538 4.97088 5.03169 5.22171 5.25393 5.34102 5.36950 5.45755 5.46719 5.76816 6.25029 6.33153 6.99951 7.02226 7.69018 8.43739 9.25808 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.049402 B = 0.003227 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.641446 B = 8675.247315 C = 8843.384266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.154 3.846 11 C -0.172 4.172 12 H 0.121 0.879 13 C -0.169 4.169 14 H 0.132 0.868 15 C 0.154 3.846 16 C 0.113 3.887 17 H 0.111 0.889 18 N -0.682 5.682 19 C 0.590 3.410 20 O -0.574 6.574 21 C -0.304 4.304 22 C -0.057 4.057 23 C -0.159 4.159 24 C -0.214 4.214 25 S 0.235 5.765 26 H 0.249 0.751 27 H 0.110 0.890 28 H -0.002 1.002 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -20.870 -10.098 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.030 3.970 11 C -0.193 4.193 12 H 0.139 0.861 13 C -0.190 4.190 14 H 0.150 0.850 15 C 0.028 3.972 16 C 0.006 3.994 17 H 0.128 0.872 18 N -0.330 5.330 19 C 0.379 3.621 20 O -0.456 6.456 21 C -0.424 4.424 22 C -0.092 4.092 23 C -0.190 4.190 24 C -0.352 4.352 25 S 0.502 5.498 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.016 0.984 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.248 0.752 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.964 -19.649 -10.442 23.037 hybrid contribution -0.044 -0.002 1.096 1.097 sum -6.007 -19.650 -9.347 22.574 Atomic orbital electron populations 1.69744 1.06239 1.24981 1.58942 1.25611 0.96630 1.00908 1.03028 0.84908 0.78004 0.79091 0.76682 1.19140 1.21685 1.22132 1.19538 0.90996 0.83318 1.42042 0.89702 1.46430 1.02082 1.00497 1.85932 1.22308 0.84912 0.96164 0.93634 1.24345 1.01364 0.90886 1.02709 0.86118 1.24329 0.90187 1.01886 1.02591 0.84983 1.21200 0.95993 0.84348 0.95659 1.21501 0.97193 0.85156 0.95534 0.87158 1.45069 1.60482 1.16078 1.11410 1.17381 0.76962 0.81293 0.86491 1.90805 1.58256 1.80785 1.15730 1.24470 1.16839 1.01140 0.99974 1.21048 0.94810 0.91210 1.02092 1.20252 1.04268 1.03041 0.91393 1.25824 1.05599 1.00578 1.03212 1.82947 1.53269 1.13948 0.99624 0.94119 0.87257 0.98406 0.95883 0.91796 0.75191 0.83548 0.81103 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.17 10.12 21.65 0.22 -55.95 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.23 -12.94 10.42 84.03 0.88 -12.07 16 8 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.62 -32.70 3.46 -678.24 -2.35 -35.05 16 10 C 0.15 7.72 6.43 85.80 0.55 8.27 16 11 C -0.17 -6.63 6.96 -9.89 -0.07 -6.70 16 12 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 13 C -0.17 -5.98 7.05 -9.90 -0.07 -6.05 16 14 H 0.13 3.96 8.14 -2.38 -0.02 3.94 16 15 C 0.15 6.53 7.05 86.52 0.61 7.14 16 16 C 0.11 3.93 5.97 44.99 0.27 4.19 16 17 H 0.11 4.43 7.40 -2.39 -0.02 4.41 16 18 N -0.68 -19.21 5.56 -446.60 -2.48 -21.69 16 19 C 0.59 18.04 7.78 86.42 0.67 18.71 16 20 O -0.57 -22.37 16.41 -4.38 -0.07 -22.44 16 21 C -0.30 -6.95 6.45 24.08 0.16 -6.80 16 22 C -0.06 -1.14 10.01 21.72 0.22 -0.92 16 23 C -0.16 -2.11 10.15 21.08 0.21 -1.90 16 24 C -0.21 -2.32 10.92 66.81 0.73 -1.59 16 25 S 0.23 3.37 22.16 -56.49 -1.25 2.12 16 26 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.11 6.14 5.34 -2.39 -0.01 6.13 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.41 9.05 7.94 -92.70 -0.74 8.32 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -70.78 304.98 1.11 -69.67 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.39 Total: 16.96 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.62 Total: -1.18 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.61 Total: -112.69 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.25 Total: 2.12 kcal Total: -70.78 1.11 -69.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958140194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.996 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds