Wall clock time and date at job start Tue Mar 31 2020 00:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46981 * 299.99662 * 3 2 1 6 6 H 1.48505 * 109.47111 * 59.99852 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 189.10558 * 7 2 1 9 9 N 1.36938 * 119.99940 * 9.10661 * 7 2 1 10 10 C 1.48152 * 127.83752 * 15.56842 * 9 7 2 11 11 C 1.54389 * 104.61821 * 140.41858 * 10 9 7 12 12 H 1.09003 * 117.61605 * 244.78885 * 11 10 9 13 13 C 1.54283 * 104.95976 * 23.86421 * 11 10 9 14 14 H 1.09004 * 121.82223 * 222.18010 * 13 11 10 15 15 C 1.47257 * 127.38230 * 194.68318 * 9 7 2 16 16 C 1.52996 * 118.12511 * 87.19008 * 11 10 9 17 17 H 1.08996 * 117.44306 * 16.10590 * 16 11 10 18 18 N 1.46498 * 117.44256 * 160.81060 * 16 11 10 19 19 C 1.34775 * 120.00049 * 224.23763 * 18 16 11 20 20 O 1.21639 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.47185 * 120.00253 * 179.97438 * 19 18 16 22 22 C 1.44431 * 123.46202 * 179.72914 * 21 19 18 23 23 C 1.32772 * 113.08222 * 179.81409 * 22 21 19 24 24 S 1.75507 * 110.57412 * 0.44104 * 23 22 21 25 25 C 1.36016 * 123.46163 * 0.03387 * 21 19 18 26 26 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.40665 * 21.63122 * 10 9 7 28 28 H 1.09003 * 110.40712 * 259.20044 * 10 9 7 29 29 H 1.08998 * 109.09030 * 100.70978 * 15 9 7 30 30 H 1.08994 * 111.29684 * 338.57561 * 15 9 7 31 31 H 0.96999 * 120.00188 * 44.24139 * 18 16 11 32 32 H 1.07993 * 123.45643 * 0.02562 * 22 21 19 33 33 H 1.07994 * 124.71218 * 180.18497 * 23 22 21 34 34 H 1.07998 * 124.58814 * 0.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7104 11 6 0.0639 -3.8172 -1.6164 12 1 -0.1152 -3.6818 -2.6831 13 6 1.2861 -4.5975 -1.0896 14 1 2.0097 -5.0557 -1.7638 15 6 1.8334 -3.7429 0.0739 16 6 -0.1183 -5.1931 -0.9725 17 1 -0.5681 -5.2278 0.0197 18 7 -0.4525 -6.3130 -1.8559 19 6 -1.4121 -7.1896 -1.4992 20 8 -2.0010 -7.0506 -0.4440 21 6 -1.7483 -8.3144 -2.3869 22 6 -2.7580 -9.2995 -2.0768 23 6 -2.8947 -10.2206 -3.0232 24 16 -1.7730 -9.9232 -4.3399 25 6 -1.1359 -8.5364 -3.5810 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3432 -1.7020 -1.2913 28 1 -0.7317 -2.7499 0.1079 29 1 1.4310 -4.0927 1.0245 30 1 2.9229 -3.7724 0.0874 31 1 0.0168 -6.4237 -2.6975 32 1 -3.3441 -9.2861 -1.1698 33 1 -3.5957 -11.0413 -2.9860 34 1 -0.3516 -7.9182 -3.9920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958163993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:47 Heat of formation + Delta-G solvation = 60.141820 kcal Electronic energy + Delta-G solvation = -18412.138435 eV Core-core repulsion = 15438.621904 eV Total energy + Delta-G solvation = -2973.516531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02065 -38.54440 -36.83922 -34.54010 -32.73121 -30.64911 -29.61152 -27.16870 -25.90484 -24.99652 -22.42034 -21.04494 -20.42891 -19.33073 -19.16073 -18.24187 -17.11653 -16.87612 -16.06643 -14.88092 -14.84324 -14.68515 -13.84767 -13.53286 -13.32618 -13.18450 -13.03385 -12.75142 -12.67391 -12.22615 -11.59411 -11.47848 -11.39582 -10.99265 -10.85405 -10.41678 -10.19220 -10.15051 -9.88986 -9.75491 -9.35093 -9.19106 -8.79144 -8.71379 -8.32689 -6.87009 -5.79861 -3.14291 0.50249 1.24795 1.61825 1.81616 3.09370 3.28349 3.38010 3.43738 3.46346 4.29756 4.45916 4.47245 4.79717 4.97404 5.09019 5.15155 5.36425 5.38501 5.53998 5.55938 5.79711 5.84342 5.88192 5.99777 6.14044 6.23643 6.50119 6.67796 6.79543 6.88668 7.36528 7.53631 7.55302 7.71494 8.21041 8.24964 9.10832 9.74186 10.49556 11.34591 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.003066 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.750425 B = 9130.570672 C = 9242.218812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.182 4.182 12 H 0.102 0.898 13 C -0.185 4.185 14 H 0.102 0.898 15 C 0.159 3.841 16 C 0.101 3.899 17 H 0.134 0.866 18 N -0.692 5.692 19 C 0.577 3.423 20 O -0.532 6.532 21 C -0.148 4.148 22 C -0.084 4.084 23 C -0.237 4.237 24 S 0.179 5.821 25 C -0.213 4.213 26 H 0.254 0.746 27 H 0.091 0.909 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.396 0.604 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -20.320 -10.077 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.204 4.204 12 H 0.120 0.880 13 C -0.206 4.206 14 H 0.120 0.880 15 C 0.032 3.968 16 C -0.005 4.005 17 H 0.151 0.849 18 N -0.340 5.340 19 C 0.363 3.637 20 O -0.410 6.410 21 C -0.166 4.166 22 C -0.113 4.113 23 C -0.372 4.372 24 S 0.444 5.556 25 C -0.351 4.351 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.231 0.769 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.203 -20.671 -10.625 23.462 hybrid contribution 0.462 1.556 0.696 1.766 sum -2.741 -19.116 -9.929 21.714 Atomic orbital electron populations 1.69914 1.05054 1.25347 1.55679 1.24899 0.95638 0.97999 1.01717 0.86044 0.78850 0.83537 0.77290 1.20374 1.21630 1.21648 1.19043 0.90888 0.82382 1.43417 0.90451 1.44973 1.12966 0.99994 1.73676 1.21073 0.86856 0.92434 0.93694 1.24741 1.02132 0.92892 1.00588 0.87993 1.24349 0.90169 1.02571 1.03522 0.87990 1.20940 0.97007 0.85824 0.93034 1.21830 0.98474 0.84670 0.95524 0.84874 1.45226 1.38429 1.27206 1.23139 1.17546 0.79519 0.81188 0.85484 1.90807 1.51589 1.74559 1.24029 1.20395 1.01013 0.99316 0.95889 1.21183 0.97272 0.92530 1.00312 1.25514 1.06782 1.05961 0.98912 1.83034 1.30627 1.20287 1.21640 1.25688 1.05771 1.03998 0.99691 0.93559 0.89083 0.95446 0.95715 0.92875 0.76947 0.82698 0.81278 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.93 10.86 55.49 0.60 -26.33 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.40 10.32 -15.06 -0.16 -6.55 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.28 3.36 -169.58 -0.57 -15.85 16 10 C 0.19 4.53 5.72 -2.41 -0.01 4.51 16 11 C -0.18 -3.49 7.06 -89.22 -0.63 -4.12 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.18 -3.27 7.03 -89.22 -0.63 -3.90 16 14 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.36 7.01 -2.90 -0.02 3.34 16 16 C 0.10 1.74 6.00 -67.93 -0.41 1.33 16 17 H 0.13 2.60 7.40 -51.93 -0.38 2.22 16 18 N -0.69 -9.68 5.53 -54.96 -0.30 -9.99 16 19 C 0.58 8.75 7.79 -12.63 -0.10 8.65 16 20 O -0.53 -10.15 16.36 5.24 0.09 -10.06 16 21 C -0.15 -1.74 5.98 -104.63 -0.63 -2.37 16 22 C -0.08 -0.88 10.10 -39.02 -0.39 -1.28 16 23 C -0.24 -1.87 11.12 28.86 0.32 -1.55 16 24 S 0.18 1.26 23.02 -107.50 -2.47 -1.22 16 25 C -0.21 -1.88 10.38 29.93 0.31 -1.57 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 4.29 7.32 -40.82 -0.30 3.99 16 32 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.17 1.12 7.01 -52.49 -0.37 0.75 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -32.65 305.17 -9.42 -42.07 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.90 Total: 3.62 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.44 Total: -3.75 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.27 Total: -52.17 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.65 -9.42 -42.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958163993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.210 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds