Wall clock time and date at job start Tue Mar 31 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46981 * 299.99662 * 3 2 1 6 6 H 1.48505 * 109.47111 * 59.99852 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 189.10558 * 7 2 1 9 9 N 1.36938 * 119.99940 * 9.10661 * 7 2 1 10 10 C 1.48152 * 127.83752 * 15.56842 * 9 7 2 11 11 C 1.54389 * 104.61821 * 140.41858 * 10 9 7 12 12 H 1.09003 * 117.61605 * 244.78885 * 11 10 9 13 13 C 1.54283 * 104.95976 * 23.86421 * 11 10 9 14 14 H 1.09004 * 121.82223 * 222.18010 * 13 11 10 15 15 C 1.47257 * 127.38230 * 194.68318 * 9 7 2 16 16 C 1.52996 * 118.12511 * 87.19008 * 11 10 9 17 17 H 1.08996 * 117.44306 * 16.10590 * 16 11 10 18 18 N 1.46498 * 117.44256 * 160.81060 * 16 11 10 19 19 C 1.34775 * 120.00049 * 224.23763 * 18 16 11 20 20 O 1.21639 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.47185 * 120.00253 * 179.97438 * 19 18 16 22 22 C 1.44431 * 123.46202 * 179.72914 * 21 19 18 23 23 C 1.32772 * 113.08222 * 179.81409 * 22 21 19 24 24 S 1.75507 * 110.57412 * 0.44104 * 23 22 21 25 25 C 1.36016 * 123.46163 * 0.03387 * 21 19 18 26 26 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.40665 * 21.63122 * 10 9 7 28 28 H 1.09003 * 110.40712 * 259.20044 * 10 9 7 29 29 H 1.08998 * 109.09030 * 100.70978 * 15 9 7 30 30 H 1.08994 * 111.29684 * 338.57561 * 15 9 7 31 31 H 0.96999 * 120.00188 * 44.24139 * 18 16 11 32 32 H 1.07993 * 123.45643 * 0.02562 * 22 21 19 33 33 H 1.07994 * 124.71218 * 180.18497 * 23 22 21 34 34 H 1.07998 * 124.58814 * 0.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7104 11 6 0.0639 -3.8172 -1.6164 12 1 -0.1152 -3.6818 -2.6831 13 6 1.2861 -4.5975 -1.0896 14 1 2.0097 -5.0557 -1.7638 15 6 1.8334 -3.7429 0.0739 16 6 -0.1183 -5.1931 -0.9725 17 1 -0.5681 -5.2278 0.0197 18 7 -0.4525 -6.3130 -1.8559 19 6 -1.4121 -7.1896 -1.4992 20 8 -2.0010 -7.0506 -0.4440 21 6 -1.7483 -8.3144 -2.3869 22 6 -2.7580 -9.2995 -2.0768 23 6 -2.8947 -10.2206 -3.0232 24 16 -1.7730 -9.9232 -4.3399 25 6 -1.1359 -8.5364 -3.5810 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3432 -1.7020 -1.2913 28 1 -0.7317 -2.7499 0.1079 29 1 1.4310 -4.0927 1.0245 30 1 2.9229 -3.7724 0.0874 31 1 0.0168 -6.4237 -2.6975 32 1 -3.3441 -9.2861 -1.1698 33 1 -3.5957 -11.0413 -2.9860 34 1 -0.3516 -7.9182 -3.9920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958163993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:42 Heat of formation + Delta-G solvation = 38.347540 kcal Electronic energy + Delta-G solvation = -18413.083506 eV Core-core repulsion = 15438.621904 eV Total energy + Delta-G solvation = -2974.461602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.28175 -40.00147 -37.73918 -36.15683 -34.41735 -32.33303 -30.57781 -28.96372 -27.69068 -26.05871 -23.81124 -22.32928 -22.00984 -20.93732 -20.15952 -19.06961 -18.84813 -18.07536 -17.39594 -16.72268 -16.04292 -15.89513 -15.54651 -15.00844 -14.65926 -14.44996 -13.98259 -13.85710 -13.72531 -13.44110 -13.31522 -13.22672 -12.89710 -12.75259 -12.15352 -12.09916 -12.00174 -11.90006 -11.70580 -11.10282 -10.84745 -10.73539 -10.04259 -9.80477 -9.32033 -8.93982 -7.92763 -5.30077 -0.22695 0.63495 0.95761 0.97336 1.46867 1.47624 1.58987 1.90738 2.21070 2.48253 2.83869 3.27633 3.57329 3.79712 3.82593 3.86926 3.91737 4.11373 4.31645 4.36280 4.45576 4.49699 4.77742 4.83899 4.86366 4.97728 5.15369 5.24339 5.27100 5.39355 5.43479 5.51234 5.62001 6.15781 6.45616 6.98900 7.13442 7.66862 8.43663 9.21575 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.003066 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.750425 B = 9130.570672 C = 9242.218812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.086 0.914 9 N -0.616 5.616 10 C 0.189 3.811 11 C -0.186 4.186 12 H 0.124 0.876 13 C -0.158 4.158 14 H 0.143 0.857 15 C 0.150 3.850 16 C 0.118 3.882 17 H 0.104 0.896 18 N -0.677 5.677 19 C 0.575 3.425 20 O -0.585 6.585 21 C -0.183 4.183 22 C -0.114 4.114 23 C -0.232 4.232 24 S 0.253 5.747 25 C -0.207 4.207 26 H 0.250 0.750 27 H 0.058 0.942 28 H -0.007 1.007 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.416 0.584 32 H 0.141 0.859 33 H 0.195 0.805 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -22.437 -12.798 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.104 0.896 9 N -0.340 5.340 10 C 0.063 3.937 11 C -0.208 4.208 12 H 0.142 0.858 13 C -0.179 4.179 14 H 0.160 0.840 15 C 0.024 3.976 16 C 0.011 3.989 17 H 0.122 0.878 18 N -0.326 5.326 19 C 0.363 3.637 20 O -0.466 6.466 21 C -0.201 4.201 22 C -0.142 4.142 23 C -0.367 4.367 24 S 0.518 5.482 25 C -0.345 4.345 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.011 0.989 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.254 0.746 32 H 0.159 0.841 33 H 0.213 0.787 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.584 -22.842 -13.386 26.523 hybrid contribution -0.059 2.074 1.509 2.565 sum -1.643 -20.767 -11.878 23.981 Atomic orbital electron populations 1.70124 1.06696 1.25731 1.57169 1.25796 0.96485 1.01505 1.02013 0.84951 0.78345 0.78909 0.76708 1.18597 1.21645 1.22043 1.19471 0.91526 0.83481 1.42575 0.89642 1.45268 1.13294 1.01241 1.74203 1.20775 0.86063 0.93741 0.93073 1.24419 1.04323 0.91505 1.00536 0.85844 1.24260 0.90437 1.01237 1.01944 0.83965 1.21105 0.98081 0.84352 0.94013 1.21353 0.98045 0.84752 0.94759 0.87769 1.44974 1.38451 1.25825 1.23362 1.18137 0.78599 0.81698 0.85241 1.90778 1.53405 1.75947 1.26469 1.20127 1.03586 0.99377 0.97030 1.21171 0.98124 0.93806 1.01122 1.25870 1.06880 1.05513 0.98473 1.82888 1.28294 1.17658 1.19314 1.26073 1.05225 1.04775 0.98444 0.94121 0.92349 0.98866 0.96767 0.91165 0.74573 0.84135 0.78742 0.78877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.19 10.86 21.65 0.24 -57.96 16 2 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 3 Si 0.98 45.69 29.56 68.60 2.03 47.71 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.24 -13.65 10.32 84.03 0.87 -12.78 16 8 H 0.09 4.56 7.84 -2.91 -0.02 4.53 16 9 N -0.62 -32.38 3.36 -690.43 -2.32 -34.70 16 10 C 0.19 9.67 5.72 86.53 0.49 10.17 16 11 C -0.19 -7.10 7.06 -9.89 -0.07 -7.17 16 12 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 13 C -0.16 -5.29 7.03 -9.89 -0.07 -5.36 16 14 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 15 C 0.15 6.30 7.01 86.71 0.61 6.91 16 16 C 0.12 4.03 6.00 44.99 0.27 4.30 16 17 H 0.10 4.27 7.40 -2.39 -0.02 4.25 16 18 N -0.68 -17.93 5.53 -446.04 -2.47 -20.40 16 19 C 0.58 17.40 7.79 86.59 0.67 18.07 16 20 O -0.58 -23.36 16.36 -4.16 -0.07 -23.43 16 21 C -0.18 -4.08 5.98 -19.87 -0.12 -4.20 16 22 C -0.11 -2.32 10.10 22.67 0.23 -2.09 16 23 C -0.23 -3.05 11.12 66.64 0.74 -2.31 16 24 S 0.25 2.50 23.02 -56.49 -1.30 1.20 16 25 C -0.21 -2.95 10.38 67.30 0.70 -2.25 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.06 3.33 6.51 -2.39 -0.02 3.32 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.42 7.62 7.32 -92.71 -0.68 6.94 16 32 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.19 1.66 7.01 -2.91 -0.02 1.64 16 Total: -1.00 -75.19 305.17 1.34 -73.85 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.45 Total: 13.67 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.78 Total: 0.05 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.55 Total: -113.06 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.30 Total: 1.20 kcal Total: -75.19 1.34 -73.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958163993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.197 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds