Wall clock time and date at job start Tue Mar 31 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99874 * 2 1 4 4 H 1.48503 * 109.47403 * 275.27817 * 3 2 1 5 5 H 1.48503 * 109.47124 * 35.27429 * 3 2 1 6 6 H 1.48494 * 109.47316 * 155.27540 * 3 2 1 7 7 C 1.38816 * 120.00156 * 180.28020 * 2 1 3 8 8 H 1.07994 * 119.99877 * 174.60121 * 7 2 1 9 9 N 1.36940 * 119.99606 * 354.59024 * 7 2 1 10 10 C 1.47868 * 126.94877 * 4.69048 * 9 7 2 11 11 C 1.55988 * 105.11640 * 181.87104 * 10 9 7 12 12 H 1.09001 * 116.17013 * 159.88981 * 11 10 9 13 13 C 1.57081 * 99.47581 * 33.16200 * 11 10 9 14 14 C 1.49288 * 126.94081 * 184.99624 * 9 7 2 15 15 H 1.09002 * 116.15372 * 15.84801 * 14 9 7 16 16 C 1.56020 * 104.09424 * 246.70108 * 14 9 7 17 17 N 1.47871 * 105.10607 * 288.77051 * 16 14 9 18 18 C 1.34773 * 126.94464 * 182.02109 * 17 16 14 19 19 O 1.21640 * 119.99992 * 174.61261 * 18 17 16 20 20 C 1.47189 * 120.00109 * 354.60982 * 18 17 16 21 21 C 1.44431 * 123.46071 * 5.23250 * 20 18 17 22 22 C 1.32765 * 113.08189 * 179.80873 * 21 20 18 23 23 S 1.75505 * 110.57763 * 0.44023 * 22 21 20 24 24 C 1.36008 * 123.46200 * 185.52426 * 20 18 17 25 25 H 0.97001 * 120.00061 * 359.72047 * 1 2 3 26 26 H 1.09002 * 110.31152 * 300.90961 * 10 9 7 27 27 H 1.09004 * 110.31641 * 63.08937 * 10 9 7 28 28 H 1.09010 * 112.36732 * 191.51406 * 13 11 10 29 29 H 1.08997 * 112.36991 * 64.07567 * 13 11 10 30 30 H 1.09005 * 110.31293 * 47.67753 * 16 14 9 31 31 H 1.08994 * 110.31519 * 169.75860 * 16 14 9 32 32 H 1.08004 * 123.45526 * 359.97438 * 21 20 18 33 33 H 1.07999 * 124.71226 * 180.18048 * 22 21 20 34 34 H 1.07998 * 124.59046 * 359.94568 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3861 2.1109 -1.3941 5 1 1.5077 2.6179 0.8085 6 1 3.5989 1.4106 0.5856 7 6 2.0103 -1.2021 -0.0059 8 1 3.0866 -1.2037 -0.0939 9 7 1.3301 -2.3859 0.1001 10 6 -0.1369 -2.5684 0.1311 11 6 -0.3523 -4.1029 0.3107 12 1 -1.3262 -4.4104 0.6916 13 6 0.9022 -4.4384 1.1945 14 6 1.9201 -3.7526 0.2141 15 1 2.9761 -3.7994 0.4799 16 6 1.5119 -4.4549 -1.1179 17 7 0.0567 -4.6891 -1.0000 18 6 -0.7395 -5.3071 -1.8947 19 8 -1.9068 -5.5188 -1.6258 20 6 -0.1966 -5.7259 -3.1971 21 6 1.1987 -5.6116 -3.5522 22 6 1.4624 -6.0545 -4.7757 23 16 -0.0035 -6.6238 -5.5549 24 6 -0.9582 -6.2550 -4.1920 25 1 -0.4850 0.8400 0.0041 26 1 -0.5684 -2.0230 0.9704 27 1 -0.5799 -2.2334 -0.8068 28 1 1.0715 -5.5115 1.2842 29 1 0.8679 -3.9473 2.1670 30 1 1.7232 -3.8060 -1.9680 31 1 2.0417 -5.4015 -1.2244 32 1 1.9508 -5.2096 -2.8894 33 1 2.4422 -6.0597 -5.2300 34 1 -2.0236 -6.4196 -4.1269 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032264626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:40 Heat of formation + Delta-G solvation = 71.122132 kcal Electronic energy + Delta-G solvation = -19674.348607 eV Core-core repulsion = 16701.308218 eV Total energy + Delta-G solvation = -2973.040389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24608 -38.20139 -36.49559 -33.64031 -31.54427 -29.71076 -29.25362 -28.55830 -25.29359 -24.90464 -23.53884 -21.02271 -20.16888 -19.40509 -18.78225 -17.81857 -16.79885 -15.94801 -15.65843 -15.15462 -14.68495 -14.16080 -13.80075 -13.47683 -13.34277 -12.86831 -12.58015 -12.50537 -11.96154 -11.81891 -11.70243 -11.29208 -11.17083 -11.02544 -10.87089 -10.66083 -10.56423 -10.19735 -10.09320 -9.67029 -9.55902 -9.00717 -8.70326 -8.43985 -7.98335 -6.94610 -5.79553 -3.13664 0.88639 1.57053 1.90966 2.14934 3.35691 3.40887 3.43423 3.44684 3.70453 4.40045 4.76597 4.91651 5.11172 5.15603 5.29851 5.41938 5.49162 5.52630 5.60765 5.76293 5.84000 5.89274 6.07821 6.13818 6.26936 6.30862 6.39489 6.48750 6.57229 6.68853 7.41116 7.46642 7.69909 8.05588 8.09124 8.58296 9.07614 9.68881 10.38112 11.32710 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005263 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.001686 B = 5319.014178 C = 5787.192492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.172 3.828 11 C 0.099 3.901 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.139 3.861 15 H 0.108 0.892 16 C 0.077 3.923 17 N -0.598 5.598 18 C 0.590 3.410 19 O -0.556 6.556 20 C -0.149 4.149 21 C -0.122 4.122 22 C -0.235 4.235 23 S 0.160 5.840 24 C -0.184 4.184 25 H 0.254 0.746 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -13.129 -6.553 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.004 4.004 12 H 0.133 0.867 13 C -0.190 4.190 14 C 0.030 3.970 15 H 0.126 0.874 16 C -0.048 4.048 17 N -0.330 5.330 18 C 0.378 3.622 19 O -0.437 6.437 20 C -0.166 4.166 21 C -0.151 4.151 22 C -0.370 4.370 23 S 0.424 5.576 24 C -0.322 4.322 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.619 -13.582 -7.909 15.934 hybrid contribution 0.661 1.625 1.218 2.136 sum 3.280 -11.957 -6.691 14.089 Atomic orbital electron populations 1.69926 1.05007 1.25359 1.56121 1.24842 0.95656 0.97746 1.01890 0.86120 0.78676 0.83575 0.77476 1.21696 1.21630 1.20538 1.19040 0.90823 0.82106 1.44134 0.90118 1.45238 1.01296 1.00005 1.85550 1.21951 0.84801 0.87280 1.01230 1.24363 0.97920 0.96390 0.81685 0.86709 1.24146 0.96598 0.99353 0.98867 1.23237 0.96638 0.86270 0.90884 0.87439 1.23638 0.80324 0.98633 1.02212 1.48982 1.09353 1.55254 1.19398 1.17176 0.84933 0.77519 0.82601 1.90744 1.16734 1.57568 1.78680 1.20367 0.93408 1.06546 0.96258 1.22212 0.95882 1.00073 0.96935 1.25493 1.02366 1.09628 0.99519 1.82886 0.97849 1.60899 1.15963 1.25499 1.05157 1.03922 0.97628 0.93551 0.92261 0.93688 0.91601 0.89658 0.90484 0.92306 0.81380 0.81553 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.59 55.49 0.59 -26.06 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.50 29.56 -169.99 -5.02 16.48 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.23 -6.12 10.37 -15.06 -0.16 -6.27 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.15 3.02 -156.36 -0.47 -14.62 16 10 C 0.17 4.13 4.78 -1.69 -0.01 4.13 16 11 C 0.10 1.94 5.25 -62.57 -0.33 1.61 16 12 H 0.12 2.20 8.03 -51.93 -0.42 1.78 16 13 C -0.15 -2.52 6.80 -22.30 -0.15 -2.68 16 14 C 0.14 2.51 5.53 -62.55 -0.35 2.17 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.29 4.29 -1.67 -0.01 1.29 16 17 N -0.60 -11.34 2.96 -158.13 -0.47 -11.81 16 18 C 0.59 11.58 7.86 -12.63 -0.10 11.48 16 19 O -0.56 -12.41 17.07 5.24 0.09 -12.32 16 20 C -0.15 -2.43 5.97 -104.63 -0.62 -3.06 16 21 C -0.12 -1.69 9.01 -39.02 -0.35 -2.04 16 22 C -0.24 -2.67 11.12 28.86 0.32 -2.35 16 23 S 0.16 1.72 23.02 -107.50 -2.48 -0.75 16 24 C -0.18 -2.61 10.53 29.93 0.32 -2.29 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.06 1.56 7.36 -51.93 -0.38 1.18 16 27 H 0.04 1.25 7.78 -51.93 -0.40 0.84 16 28 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.40 6.91 -51.93 -0.36 1.04 16 31 H 0.06 0.80 6.93 -51.93 -0.36 0.44 16 32 H 0.17 2.21 3.87 -52.48 -0.20 2.00 16 33 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.17 2.35 8.03 -52.49 -0.42 1.93 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -31.70 292.07 -8.68 -40.37 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.78 Total: 2.54 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.53 Total: 1.76 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.35 Total: -52.49 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.48 Total: -0.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.70 -8.68 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032264626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.494 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds