Wall clock time and date at job start Tue Mar 31 2020 00:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99874 * 2 1 4 4 H 1.48503 * 109.47403 * 275.27817 * 3 2 1 5 5 H 1.48503 * 109.47124 * 35.27429 * 3 2 1 6 6 H 1.48494 * 109.47316 * 155.27540 * 3 2 1 7 7 C 1.38816 * 120.00156 * 180.28020 * 2 1 3 8 8 H 1.07994 * 119.99877 * 174.60121 * 7 2 1 9 9 N 1.36940 * 119.99606 * 354.59024 * 7 2 1 10 10 C 1.47868 * 126.94877 * 4.69048 * 9 7 2 11 11 C 1.55988 * 105.11640 * 181.87104 * 10 9 7 12 12 H 1.09001 * 116.17013 * 159.88981 * 11 10 9 13 13 C 1.57081 * 99.47581 * 33.16200 * 11 10 9 14 14 C 1.49288 * 126.94081 * 184.99624 * 9 7 2 15 15 H 1.09002 * 116.15372 * 15.84801 * 14 9 7 16 16 C 1.56020 * 104.09424 * 246.70108 * 14 9 7 17 17 N 1.47871 * 105.10607 * 288.77051 * 16 14 9 18 18 C 1.34773 * 126.94464 * 182.02109 * 17 16 14 19 19 O 1.21640 * 119.99992 * 174.61261 * 18 17 16 20 20 C 1.47189 * 120.00109 * 354.60982 * 18 17 16 21 21 C 1.44431 * 123.46071 * 5.23250 * 20 18 17 22 22 C 1.32765 * 113.08189 * 179.80873 * 21 20 18 23 23 S 1.75505 * 110.57763 * 0.44023 * 22 21 20 24 24 C 1.36008 * 123.46200 * 185.52426 * 20 18 17 25 25 H 0.97001 * 120.00061 * 359.72047 * 1 2 3 26 26 H 1.09002 * 110.31152 * 300.90961 * 10 9 7 27 27 H 1.09004 * 110.31641 * 63.08937 * 10 9 7 28 28 H 1.09010 * 112.36732 * 191.51406 * 13 11 10 29 29 H 1.08997 * 112.36991 * 64.07567 * 13 11 10 30 30 H 1.09005 * 110.31293 * 47.67753 * 16 14 9 31 31 H 1.08994 * 110.31519 * 169.75860 * 16 14 9 32 32 H 1.08004 * 123.45526 * 359.97438 * 21 20 18 33 33 H 1.07999 * 124.71226 * 180.18048 * 22 21 20 34 34 H 1.07998 * 124.59046 * 359.94568 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3861 2.1109 -1.3941 5 1 1.5077 2.6179 0.8085 6 1 3.5989 1.4106 0.5856 7 6 2.0103 -1.2021 -0.0059 8 1 3.0866 -1.2037 -0.0939 9 7 1.3301 -2.3859 0.1001 10 6 -0.1369 -2.5684 0.1311 11 6 -0.3523 -4.1029 0.3107 12 1 -1.3262 -4.4104 0.6916 13 6 0.9022 -4.4384 1.1945 14 6 1.9201 -3.7526 0.2141 15 1 2.9761 -3.7994 0.4799 16 6 1.5119 -4.4549 -1.1179 17 7 0.0567 -4.6891 -1.0000 18 6 -0.7395 -5.3071 -1.8947 19 8 -1.9068 -5.5188 -1.6258 20 6 -0.1966 -5.7259 -3.1971 21 6 1.1987 -5.6116 -3.5522 22 6 1.4624 -6.0545 -4.7757 23 16 -0.0035 -6.6238 -5.5549 24 6 -0.9582 -6.2550 -4.1920 25 1 -0.4850 0.8400 0.0041 26 1 -0.5684 -2.0230 0.9704 27 1 -0.5799 -2.2334 -0.8068 28 1 1.0715 -5.5115 1.2842 29 1 0.8679 -3.9473 2.1670 30 1 1.7232 -3.8060 -1.9680 31 1 2.0417 -5.4015 -1.2244 32 1 1.9508 -5.2096 -2.8894 33 1 2.4422 -6.0597 -5.2300 34 1 -2.0236 -6.4196 -4.1269 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032264626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:39 Heat of formation + Delta-G solvation = 50.848273 kcal Electronic energy + Delta-G solvation = -19675.227748 eV Core-core repulsion = 16701.308218 eV Total energy + Delta-G solvation = -2973.919530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74849 -39.65589 -37.71985 -35.46921 -33.29802 -30.91954 -30.78753 -30.20983 -27.04241 -26.23756 -25.12332 -22.42319 -21.63063 -20.83533 -20.23458 -19.10029 -18.41307 -17.52121 -17.08398 -16.61827 -16.31374 -15.78761 -15.28355 -14.89848 -14.86488 -13.93121 -13.85986 -13.76244 -13.54774 -13.39612 -13.18774 -13.04975 -12.79119 -12.69519 -12.37476 -12.19935 -12.07881 -11.96164 -11.65707 -11.53450 -11.06504 -10.70509 -10.03295 -9.60491 -9.30904 -8.90622 -7.84850 -5.20166 -0.19974 0.61998 0.93841 1.03017 1.47695 1.48795 1.58244 2.01119 2.33278 2.49096 3.32963 3.37118 3.63037 3.79977 3.85897 3.92266 4.01042 4.19102 4.37623 4.48031 4.54819 4.61313 4.79015 4.87105 4.95944 5.01449 5.13383 5.14479 5.23764 5.28043 5.44617 5.54011 5.64939 6.09646 6.60418 7.02508 7.09488 7.71012 8.41920 9.26918 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005263 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.001686 B = 5319.014178 C = 5787.192492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.259 1.259 7 C -0.229 4.229 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.099 3.901 12 H 0.112 0.888 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.141 0.859 16 C 0.085 3.915 17 N -0.602 5.602 18 C 0.580 3.420 19 O -0.599 6.599 20 C -0.182 4.182 21 C -0.142 4.142 22 C -0.226 4.226 23 S 0.241 5.759 24 C -0.203 4.203 25 H 0.243 0.757 26 H 0.022 0.978 27 H -0.008 1.008 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.173 0.827 33 H 0.202 0.798 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -15.202 -7.815 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.183 1.183 7 C -0.358 4.358 8 H 0.116 0.884 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.004 4.004 12 H 0.130 0.870 13 C -0.167 4.167 14 C 0.028 3.972 15 H 0.159 0.841 16 C -0.038 4.038 17 N -0.333 5.333 18 C 0.370 3.630 19 O -0.483 6.483 20 C -0.200 4.200 21 C -0.169 4.169 22 C -0.361 4.361 23 S 0.507 5.493 24 C -0.342 4.342 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.010 0.990 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.190 0.810 33 H 0.219 0.781 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.779 -15.703 -9.179 19.085 hybrid contribution -0.310 2.173 1.474 2.644 sum 5.469 -13.531 -7.705 16.503 Atomic orbital electron populations 1.70175 1.06750 1.25159 1.58711 1.25691 0.96337 1.01268 1.03103 0.85084 0.78146 0.79359 0.76886 1.22064 1.22882 1.18300 1.19564 0.91725 0.83042 1.41424 0.88370 1.45489 1.01270 1.01840 1.85373 1.21522 0.85276 0.90116 0.97001 1.24202 0.99575 0.93157 0.83496 0.86971 1.24051 0.93566 1.01344 0.97712 1.23686 0.98424 0.83117 0.91932 0.84113 1.23606 0.79253 1.00377 1.00596 1.49059 1.10397 1.54841 1.19002 1.17817 0.84514 0.76979 0.83691 1.90698 1.18471 1.59458 1.79642 1.20307 0.95257 1.09209 0.95226 1.22139 0.94560 1.01873 0.98351 1.25966 1.04223 1.07325 0.98596 1.82642 0.95887 1.58168 1.12638 1.25755 1.05704 1.03498 0.99207 0.94735 0.95945 0.99011 0.87972 0.89840 0.91967 0.87761 0.80985 0.78083 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.73 10.59 21.65 0.23 -58.50 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 3 Si 0.98 44.95 29.56 68.60 2.03 46.98 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.23 -11.98 10.37 84.03 0.87 -11.11 16 8 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 9 N -0.62 -29.31 3.02 -648.60 -1.96 -31.27 16 10 C 0.19 9.47 4.78 87.15 0.42 9.88 16 11 C 0.10 3.96 5.25 46.92 0.25 4.20 16 12 H 0.11 4.50 8.03 -2.39 -0.02 4.48 16 13 C -0.13 -4.03 6.80 33.46 0.23 -3.80 16 14 C 0.13 4.56 5.53 46.93 0.26 4.82 16 15 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 16 C 0.09 2.69 4.29 87.16 0.37 3.07 16 17 N -0.60 -22.83 2.96 -772.45 -2.28 -25.11 16 18 C 0.58 23.23 7.86 86.59 0.68 23.91 16 19 O -0.60 -27.88 17.07 -4.16 -0.07 -27.95 16 20 C -0.18 -5.84 5.97 -19.87 -0.12 -5.96 16 21 C -0.14 -3.56 9.01 22.67 0.20 -3.35 16 22 C -0.23 -4.23 11.12 66.64 0.74 -3.49 16 23 S 0.24 4.40 23.02 -56.49 -1.30 3.10 16 24 C -0.20 -5.56 10.53 67.30 0.71 -4.85 16 25 H 0.24 14.71 8.31 -92.71 -0.77 13.93 16 26 H 0.02 1.28 7.36 -2.39 -0.02 1.26 16 27 H -0.01 -0.50 7.78 -2.39 -0.02 -0.52 16 28 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.06 2.18 6.91 -2.38 -0.02 2.17 16 31 H 0.10 2.41 6.93 -2.39 -0.02 2.39 16 32 H 0.17 4.02 3.87 -2.91 -0.01 4.00 16 33 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.17 4.61 8.03 -2.91 -0.02 4.59 16 Total: -1.00 -74.08 292.07 2.84 -71.23 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.12 Total: 11.77 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.08 Total: 9.76 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.01 Total: -114.88 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.07 Total: -27.95 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.30 Total: 3.10 kcal Total: -74.08 2.84 -71.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032264626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.081 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds