Wall clock time and date at job start Tue Mar 31 2020 00:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47210 * 240.00180 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00191 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47008 * 179.97438 * 12 11 10 14 14 C 1.34232 * 116.99674 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99902 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00082 * 180.02562 * 14 13 12 17 17 F 1.39906 * 110.80346 * 313.62557 * 16 14 13 18 18 C 1.54816 * 110.91006 * 189.99973 * 16 14 13 19 19 C 1.54105 * 104.18705 * 220.92014 * 18 16 14 20 20 O 1.43738 * 107.29155 * 357.96498 * 19 18 16 21 21 C 1.44379 * 106.97885 * 26.51812 * 20 19 18 22 22 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 24 24 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 25 25 H 1.09004 * 109.46930 * 299.99794 * 11 10 9 26 26 H 1.09000 * 109.47312 * 59.99850 * 11 10 9 27 27 H 1.08993 * 109.46765 * 300.00186 * 12 11 10 28 28 H 1.09000 * 109.46866 * 59.99785 * 12 11 10 29 29 H 1.08996 * 110.48409 * 339.59136 * 18 16 14 30 30 H 1.08993 * 110.49020 * 102.10682 * 18 16 14 31 31 H 1.08992 * 109.87762 * 117.39262 * 19 18 16 32 32 H 1.09003 * 109.87442 * 238.39438 * 19 18 16 33 33 H 1.09010 * 110.61754 * 201.43774 * 21 20 19 34 34 H 1.08993 * 110.62095 * 78.43720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0049 12 6 3.1515 -6.3077 -0.0064 13 8 2.6423 -7.6674 -0.0076 14 6 3.5486 -8.6575 -0.0085 15 8 4.7284 -8.3965 -0.0087 16 6 3.0948 -10.0945 -0.0104 17 9 2.0844 -10.2977 0.9358 18 6 4.2865 -11.0506 0.2400 19 6 4.0436 -12.2199 -0.7339 20 8 2.8069 -11.9567 -1.4176 21 6 2.6250 -10.5244 -1.4234 22 1 -0.4851 0.8400 0.0004 23 1 3.1245 -3.7304 -0.8928 24 1 3.1246 -3.7320 0.8872 25 1 1.3705 -5.4853 0.8848 26 1 1.3710 -5.4832 -0.8952 27 1 3.7599 -6.1463 -0.8962 28 1 3.7602 -6.1488 0.8837 29 1 5.2291 -10.5533 0.0114 30 1 4.2825 -11.4032 1.2713 31 1 4.8600 -12.2783 -1.4537 32 1 3.9712 -13.1554 -0.1791 33 1 1.5751 -10.2715 -1.5723 34 1 3.2449 -10.0618 -2.1913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117298081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:26 Heat of formation + Delta-G solvation = -188.974036 kcal Electronic energy + Delta-G solvation = -18919.251112 eV Core-core repulsion = 15471.870130 eV Total energy + Delta-G solvation = -3447.380981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.35558 -40.91319 -39.32810 -37.06206 -33.65044 -32.48416 -32.43690 -30.04218 -26.91368 -25.56382 -24.33597 -23.16792 -21.46000 -20.78932 -18.73740 -17.65570 -17.49364 -17.21178 -16.76828 -16.08497 -15.80820 -15.33576 -14.84951 -14.77767 -14.62876 -14.35061 -13.80188 -13.36362 -13.04957 -12.91282 -12.59969 -12.29803 -12.23919 -12.00430 -11.62803 -11.43251 -11.26384 -11.05046 -10.98585 -10.75967 -10.65503 -10.42855 -10.27328 -9.68706 -9.09891 -8.40188 -6.60267 -6.27464 -3.99178 1.57086 2.02767 3.15456 3.19255 3.20789 3.25451 3.40455 3.50819 3.73193 4.03608 4.16882 4.24888 4.39042 4.51624 4.97635 4.99124 5.02182 5.08260 5.08932 5.17200 5.23867 5.31428 5.35797 5.38377 5.68444 5.76499 6.00026 6.12229 6.21260 6.37275 6.58616 7.24291 7.55734 8.31509 9.18673 10.80613 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.054096 B = 0.002679 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.471327 B =10450.818880 C =10675.843360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.115 4.115 11 C -0.099 4.099 12 C 0.070 3.930 13 O -0.340 6.340 14 C 0.456 3.544 15 O -0.486 6.486 16 C 0.099 3.901 17 F -0.168 7.168 18 C -0.171 4.171 19 C 0.047 3.953 20 O -0.361 6.361 21 C 0.040 3.960 22 H 0.269 0.731 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -22.382 -1.313 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.005 4.005 13 O -0.255 6.255 14 C 0.296 3.704 15 O -0.373 6.373 16 C 0.079 3.921 17 F -0.148 7.148 18 C -0.209 4.209 19 C -0.030 4.030 20 O -0.279 6.279 21 C -0.037 4.037 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.617 -22.482 -1.378 23.476 hybrid contribution 2.094 1.599 0.286 2.650 sum 8.711 -20.882 -1.092 22.652 Atomic orbital electron populations 1.70002 1.05937 1.27587 1.46926 1.25017 0.95097 0.99131 0.94473 0.86203 0.79232 0.81093 0.78886 1.19894 1.20764 1.19898 1.22650 0.94550 0.90669 1.58952 0.90880 1.84682 1.08593 0.99184 1.96893 1.23184 1.03567 0.96232 1.03376 1.21310 0.96303 0.91493 1.04596 1.23447 0.98177 0.75903 1.02942 1.86538 1.39562 1.17130 1.82303 1.23317 0.85144 0.88309 0.73645 1.90700 1.18074 1.84308 1.44257 1.22229 0.88401 0.89982 0.91525 1.92996 1.61065 1.95465 1.65307 1.23629 0.98313 0.95553 1.03424 1.23266 0.87300 0.98267 0.94141 1.88979 1.40477 1.20689 1.77777 1.24128 1.04822 0.82603 0.92182 0.92140 0.91687 0.91683 0.90128 0.90154 0.90703 0.90759 0.86618 0.87852 0.90988 0.88540 0.85845 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.70 9.50 30.94 0.29 -14.40 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.12 21.44 -107.50 -2.30 -5.42 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.10 -1.56 5.60 -26.73 -0.15 -1.71 16 12 C 0.07 0.96 5.47 37.16 0.20 1.16 16 13 O -0.34 -4.55 10.21 -39.26 -0.40 -4.95 16 14 C 0.46 5.56 7.03 36.00 0.25 5.82 16 15 O -0.49 -6.66 15.21 -18.75 -0.29 -6.94 16 16 C 0.10 0.98 1.68 -89.76 -0.15 0.83 16 17 F -0.17 -1.95 16.98 2.25 0.04 -1.92 16 18 C -0.17 -1.29 6.31 -25.20 -0.16 -1.45 16 19 C 0.05 0.31 7.70 37.73 0.29 0.60 16 20 O -0.36 -3.33 11.52 -35.23 -0.41 -3.74 16 21 C 0.04 0.34 6.97 38.21 0.27 0.60 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 24 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.12 0.87 6.78 -51.93 -0.35 0.52 16 30 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.12 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -32.08 313.19 -6.51 -38.58 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.54 Total: -3.00 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 0.96 Total: -8.64 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.73 Total: -24.97 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.09 Total: -15.63 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.08 -6.51 -38.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117298081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.390 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds