Wall clock time and date at job start Tue Mar 31 2020 00:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47210 * 240.00180 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00191 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47008 * 179.97438 * 12 11 10 14 14 C 1.34232 * 116.99674 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99902 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00082 * 180.02562 * 14 13 12 17 17 F 1.39906 * 110.80346 * 313.62557 * 16 14 13 18 18 C 1.54816 * 110.91006 * 189.99973 * 16 14 13 19 19 C 1.54105 * 104.18705 * 220.92014 * 18 16 14 20 20 O 1.43738 * 107.29155 * 357.96498 * 19 18 16 21 21 C 1.44379 * 106.97885 * 26.51812 * 20 19 18 22 22 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 24 24 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 25 25 H 1.09004 * 109.46930 * 299.99794 * 11 10 9 26 26 H 1.09000 * 109.47312 * 59.99850 * 11 10 9 27 27 H 1.08993 * 109.46765 * 300.00186 * 12 11 10 28 28 H 1.09000 * 109.46866 * 59.99785 * 12 11 10 29 29 H 1.08996 * 110.48409 * 339.59136 * 18 16 14 30 30 H 1.08993 * 110.49020 * 102.10682 * 18 16 14 31 31 H 1.08992 * 109.87762 * 117.39262 * 19 18 16 32 32 H 1.09003 * 109.87442 * 238.39438 * 19 18 16 33 33 H 1.09010 * 110.61754 * 201.43774 * 21 20 19 34 34 H 1.08993 * 110.62095 * 78.43720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0049 12 6 3.1515 -6.3077 -0.0064 13 8 2.6423 -7.6674 -0.0076 14 6 3.5486 -8.6575 -0.0085 15 8 4.7284 -8.3965 -0.0087 16 6 3.0948 -10.0945 -0.0104 17 9 2.0844 -10.2977 0.9358 18 6 4.2865 -11.0506 0.2400 19 6 4.0436 -12.2199 -0.7339 20 8 2.8069 -11.9567 -1.4176 21 6 2.6250 -10.5244 -1.4234 22 1 -0.4851 0.8400 0.0004 23 1 3.1245 -3.7304 -0.8928 24 1 3.1246 -3.7320 0.8872 25 1 1.3705 -5.4853 0.8848 26 1 1.3710 -5.4832 -0.8952 27 1 3.7599 -6.1463 -0.8962 28 1 3.7602 -6.1488 0.8837 29 1 5.2291 -10.5533 0.0114 30 1 4.2825 -11.4032 1.2713 31 1 4.8600 -12.2783 -1.4537 32 1 3.9712 -13.1554 -0.1791 33 1 1.5751 -10.2715 -1.5723 34 1 3.2449 -10.0618 -2.1913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117298081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:26 Heat of formation + Delta-G solvation = -208.571758 kcal Electronic energy + Delta-G solvation = -18920.100933 eV Core-core repulsion = 15471.870130 eV Total energy + Delta-G solvation = -3448.230802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.19530 -41.88396 -40.01392 -38.10336 -34.99520 -34.59580 -33.15240 -30.67665 -28.30098 -27.53852 -25.22558 -23.82248 -22.78373 -21.64474 -19.76643 -19.40483 -18.51862 -18.18607 -17.62098 -16.90371 -16.87678 -16.51531 -16.36802 -15.96514 -15.82076 -15.35388 -15.06864 -14.53631 -14.20784 -13.98601 -13.85420 -13.57966 -13.15741 -12.94527 -12.87116 -12.71949 -12.59085 -12.50009 -12.45988 -12.29131 -11.73721 -11.62410 -11.45683 -11.14708 -10.85118 -10.37419 -8.69486 -8.38679 -6.15686 0.61765 1.03819 1.32884 1.40875 1.48044 1.72602 2.26158 2.53558 2.73351 2.95960 2.98697 3.26250 3.34871 3.43893 3.79799 3.83248 3.87989 4.00096 4.09844 4.28709 4.35049 4.41648 4.49722 4.63489 4.66990 4.73989 4.85376 4.97489 4.98370 5.22974 5.38875 5.55214 6.16734 6.24958 7.03678 8.70423 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.054096 B = 0.002679 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.471327 B =10450.818880 C =10675.843360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.075 0.925 9 S -0.187 6.187 10 C -0.091 4.091 11 C -0.088 4.088 12 C 0.077 3.923 13 O -0.347 6.347 14 C 0.458 3.542 15 O -0.501 6.501 16 C 0.093 3.907 17 F -0.180 7.180 18 C -0.167 4.167 19 C 0.045 3.955 20 O -0.378 6.378 21 C 0.041 3.959 22 H 0.272 0.728 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -23.080 -1.551 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.689 4.689 8 H 0.093 0.907 9 S 0.042 5.958 10 C -0.240 4.240 11 C -0.127 4.127 12 C 0.002 3.998 13 O -0.263 6.263 14 C 0.299 3.701 15 O -0.389 6.389 16 C 0.073 3.927 17 F -0.160 7.160 18 C -0.204 4.204 19 C -0.031 4.031 20 O -0.297 6.297 21 C -0.036 4.036 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.165 -23.201 -1.615 24.649 hybrid contribution 1.634 1.700 0.368 2.386 sum 9.799 -21.501 -1.247 23.662 Atomic orbital electron populations 1.70138 1.07688 1.28709 1.47807 1.26065 0.96029 1.03132 0.93706 0.85068 0.77932 0.76066 0.79373 1.18861 1.20031 1.18953 1.23024 0.94867 0.91873 1.59099 0.90652 1.84680 1.13148 1.00914 1.97078 1.23063 1.00802 0.96298 1.03859 1.21127 0.97047 0.89915 1.04583 1.23220 0.96885 0.75964 1.03706 1.86525 1.40132 1.17099 1.82548 1.23751 0.84776 0.88760 0.72799 1.90693 1.18613 1.84608 1.44997 1.22479 0.89166 0.88759 0.92275 1.92971 1.61744 1.95386 1.65910 1.23675 0.97090 0.95236 1.04414 1.23467 0.86899 0.98414 0.94356 1.88961 1.41782 1.20821 1.78161 1.24202 1.05419 0.82542 0.91450 0.91891 0.90982 0.91254 0.90463 0.89976 0.89649 0.90361 0.86591 0.86911 0.89296 0.86879 0.85472 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.28 13.22 21.65 0.29 -54.00 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.72 9.50 67.95 0.65 -30.08 16 8 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.19 -9.72 21.44 -56.49 -1.21 -10.93 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.09 -2.70 5.60 30.60 0.17 -2.53 16 12 C 0.08 1.99 5.47 71.98 0.39 2.38 16 13 O -0.35 -8.84 10.21 -51.44 -0.53 -9.37 16 14 C 0.46 10.55 7.03 71.23 0.50 11.05 16 15 O -0.50 -12.95 15.21 21.95 0.33 -12.62 16 16 C 0.09 1.72 1.68 -10.24 -0.02 1.70 16 17 F -0.18 -4.00 16.98 44.97 0.76 -3.24 16 18 C -0.17 -2.18 6.31 31.59 0.20 -1.98 16 19 C 0.04 0.48 7.70 72.36 0.56 1.04 16 20 O -0.38 -6.30 11.52 -148.98 -1.72 -8.02 16 21 C 0.04 0.63 6.97 72.66 0.51 1.14 16 22 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 25 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 28 H 0.08 1.97 8.13 -2.39 -0.02 1.96 16 29 H 0.12 1.53 6.78 -2.39 -0.02 1.52 16 30 H 0.11 1.24 8.12 -2.39 -0.02 1.23 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.10 1.27 8.04 -2.39 -0.02 1.25 16 Total: -1.00 -68.53 313.19 4.89 -63.65 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.10 Total: 8.16 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.83 Total: -19.01 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.29 Total: -54.00 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.91 Total: -30.01 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.76 Total: -3.24 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -9.72 SS G_CDS: -1.21 Total: -10.93 kcal Total: -68.53 4.89 -63.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117298081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.926 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds