Wall clock time and date at job start Tue Mar 31 2020 00:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48496 * 109.46953 * 239.99853 * 3 2 1 5 5 H 1.48498 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47260 * 119.99410 * 3 2 1 7 7 C 1.38794 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99610 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99732 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47030 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99865 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.39403 * 120.00326 * 174.90758 * 13 11 10 15 15 C 1.39043 * 119.69894 * 185.10056 * 14 13 11 16 16 C 1.38359 * 119.10172 * 179.78639 * 15 14 13 17 17 C 1.38832 * 118.49288 * 0.48000 * 16 15 14 18 18 C 1.50709 * 120.34338 * 179.72188 * 17 16 15 19 19 C 1.52998 * 117.49807 * 188.64334 * 18 17 16 20 20 C 1.52994 * 59.99930 * 252.51169 * 19 18 17 21 21 C 1.38074 * 119.31355 * 359.74363 * 17 16 15 22 22 N 1.31928 * 120.84930 * 0.02562 * 21 17 16 23 23 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47163 * 60.00459 * 10 9 7 25 25 H 1.08993 * 109.47360 * 299.99842 * 10 9 7 26 26 H 0.96998 * 119.99591 * 354.90428 * 13 11 10 27 27 H 1.07999 * 120.44646 * 0.02562 * 15 14 13 28 28 H 1.08000 * 120.75252 * 180.19754 * 16 15 14 29 29 H 1.08996 * 115.54627 * 334.35177 * 18 17 16 30 30 H 1.08998 * 117.49829 * 359.97438 * 19 18 17 31 31 H 1.09002 * 117.49539 * 145.01657 * 19 18 17 32 32 H 1.09003 * 117.49978 * 252.51735 * 20 19 18 33 33 H 1.08999 * 117.50108 * 107.48999 * 20 19 18 34 34 H 1.08002 * 119.57407 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9874 -5.3026 0.0017 12 8 0.7912 -5.5022 0.0009 13 7 2.8442 -6.3430 0.0033 14 6 2.3589 -7.6455 0.1100 15 6 3.2511 -8.7064 0.2181 16 6 2.7559 -9.9937 0.3279 17 6 1.3798 -10.1772 0.3157 18 6 0.7954 -11.5619 0.4263 19 6 -0.7108 -11.7129 0.2036 20 6 -0.1286 -11.8460 1.6122 21 6 0.5522 -9.0780 0.2005 22 7 1.0531 -7.8614 0.1021 23 1 -0.4850 0.8401 -0.0004 24 1 3.1237 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8874 26 1 3.7985 -6.1855 -0.0700 27 1 4.3162 -8.5277 0.2203 28 1 3.4247 -10.8370 0.4165 29 1 1.4388 -12.3724 0.0841 30 1 -1.2790 -10.8106 -0.0225 31 1 -1.0585 -12.6229 -0.2854 32 1 -0.0932 -12.8436 2.0500 33 1 -0.3137 -11.0314 2.3124 34 1 -0.5189 -9.2158 0.1909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119988995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:50 Heat of formation + Delta-G solvation = 37.102802 kcal Electronic energy + Delta-G solvation = -17877.932366 eV Core-core repulsion = 14903.416788 eV Total energy + Delta-G solvation = -2974.515578 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79519 -39.02265 -37.20235 -34.45879 -32.47455 -32.43717 -30.48535 -28.61333 -25.51619 -24.40974 -23.83818 -22.56286 -20.93665 -20.41441 -18.33698 -17.62741 -16.87417 -16.27631 -15.44003 -15.32254 -14.89372 -14.81989 -14.77064 -14.12319 -13.88316 -13.44098 -13.24402 -12.80525 -12.58296 -12.20447 -11.97095 -11.72316 -11.33266 -11.05892 -11.04310 -10.79279 -10.66274 -10.24311 -9.87440 -9.84167 -9.80250 -9.06850 -8.85914 -8.26532 -8.07559 -6.51968 -6.22397 -3.93702 1.02271 1.26893 2.81566 3.01128 3.23161 3.24481 3.28678 3.54273 3.55263 3.99472 4.18723 4.25325 4.49800 4.59613 4.71974 4.76466 4.89394 4.98103 5.08343 5.12655 5.23032 5.37731 5.49371 5.59028 5.68689 5.73291 5.82626 5.85940 5.92890 6.07767 6.14387 6.30173 6.79448 7.28596 7.58269 8.12586 8.33868 8.56745 9.22567 10.84952 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.003020 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.309950 B = 9268.219134 C = 9745.304613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.518 3.482 12 O -0.446 6.446 13 N -0.666 5.666 14 C 0.367 3.633 15 C -0.211 4.211 16 C -0.042 4.042 17 C -0.149 4.149 18 C -0.106 4.106 19 C -0.178 4.178 20 C -0.172 4.172 21 C 0.136 3.864 22 N -0.470 5.470 23 H 0.269 0.731 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.415 0.585 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -22.767 1.010 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.171 5.829 10 C -0.304 4.304 11 C 0.303 3.697 12 O -0.312 6.312 13 N -0.314 5.314 14 C 0.135 3.865 15 C -0.235 4.235 16 C -0.068 4.068 17 C -0.153 4.153 18 C -0.125 4.125 19 C -0.215 4.215 20 C -0.209 4.209 21 C -0.023 4.023 22 N -0.184 5.184 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.251 0.749 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.137 -22.102 0.938 22.506 hybrid contribution 3.136 0.644 0.034 3.202 sum 7.273 -21.458 0.972 22.678 Atomic orbital electron populations 1.70006 1.05959 1.27627 1.46630 1.24995 0.95037 0.99043 0.94488 0.86212 0.79227 0.81192 0.78797 1.19926 1.20795 1.19926 1.22820 0.94891 0.91587 1.59242 0.90903 1.85456 1.04477 0.96246 1.96738 1.23559 1.06939 0.94682 1.05174 1.20622 0.86885 0.85952 0.76267 1.90813 1.14506 1.84501 1.41376 1.43865 1.11328 1.03260 1.72936 1.18612 0.89527 0.85205 0.93172 1.21437 1.00249 0.92396 1.09368 1.21073 0.94449 0.96402 0.94885 1.19996 0.94106 0.94870 1.06280 1.20813 0.92931 0.94592 1.04138 1.23082 0.95083 1.03752 0.99583 1.23058 1.03358 1.03085 0.91413 1.22594 1.00299 0.86122 0.93286 1.67783 1.12114 1.23800 1.14693 0.92078 0.88911 0.88957 0.74853 0.84681 0.84751 0.87036 0.88144 0.88352 0.88501 0.88489 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 11 C 0.52 10.04 7.81 -10.99 -0.09 9.96 16 12 O -0.45 -10.58 14.13 5.56 0.08 -10.50 16 13 N -0.67 -9.69 5.39 -11.42 -0.06 -9.75 16 14 C 0.37 5.43 7.42 -154.70 -1.15 4.28 16 15 C -0.21 -2.27 9.94 -39.24 -0.39 -2.66 16 16 C -0.04 -0.41 9.88 -39.32 -0.39 -0.80 16 17 C -0.15 -1.59 5.63 -104.46 -0.59 -2.18 16 18 C -0.11 -0.86 6.06 -91.77 -0.56 -1.42 16 19 C -0.18 -1.33 9.86 -26.73 -0.26 -1.60 16 20 C -0.17 -1.28 10.17 -26.74 -0.27 -1.55 16 21 C 0.14 1.84 10.46 -17.57 -0.18 1.65 16 22 N -0.47 -8.08 7.89 -12.37 -0.10 -8.18 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 25 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 26 H 0.42 4.20 8.70 -40.82 -0.36 3.84 16 27 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.80 6.20 -51.93 -0.32 0.47 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.16 1.85 6.03 -52.49 -0.32 1.53 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -35.87 312.46 -9.25 -45.12 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.92 Total: 1.56 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.46 Total: -10.11 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.57 Total: -43.40 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.87 -9.25 -45.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119988995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.225 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds