Wall clock time and date at job start Tue Mar 31 2020 00:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48496 * 109.46953 * 239.99853 * 3 2 1 5 5 H 1.48498 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47260 * 119.99410 * 3 2 1 7 7 C 1.38794 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99610 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99732 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47030 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99865 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.39403 * 120.00326 * 174.90758 * 13 11 10 15 15 C 1.39043 * 119.69894 * 185.10056 * 14 13 11 16 16 C 1.38359 * 119.10172 * 179.78639 * 15 14 13 17 17 C 1.38832 * 118.49288 * 0.48000 * 16 15 14 18 18 C 1.50709 * 120.34338 * 179.72188 * 17 16 15 19 19 C 1.52998 * 117.49807 * 188.64334 * 18 17 16 20 20 C 1.52994 * 59.99930 * 252.51169 * 19 18 17 21 21 C 1.38074 * 119.31355 * 359.74363 * 17 16 15 22 22 N 1.31928 * 120.84930 * 0.02562 * 21 17 16 23 23 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47163 * 60.00459 * 10 9 7 25 25 H 1.08993 * 109.47360 * 299.99842 * 10 9 7 26 26 H 0.96998 * 119.99591 * 354.90428 * 13 11 10 27 27 H 1.07999 * 120.44646 * 0.02562 * 15 14 13 28 28 H 1.08000 * 120.75252 * 180.19754 * 16 15 14 29 29 H 1.08996 * 115.54627 * 334.35177 * 18 17 16 30 30 H 1.08998 * 117.49829 * 359.97438 * 19 18 17 31 31 H 1.09002 * 117.49539 * 145.01657 * 19 18 17 32 32 H 1.09003 * 117.49978 * 252.51735 * 20 19 18 33 33 H 1.08999 * 117.50108 * 107.48999 * 20 19 18 34 34 H 1.08002 * 119.57407 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9874 -5.3026 0.0017 12 8 0.7912 -5.5022 0.0009 13 7 2.8442 -6.3430 0.0033 14 6 2.3589 -7.6455 0.1100 15 6 3.2511 -8.7064 0.2181 16 6 2.7559 -9.9937 0.3279 17 6 1.3798 -10.1772 0.3157 18 6 0.7954 -11.5619 0.4263 19 6 -0.7108 -11.7129 0.2036 20 6 -0.1286 -11.8460 1.6122 21 6 0.5522 -9.0780 0.2005 22 7 1.0531 -7.8614 0.1021 23 1 -0.4850 0.8401 -0.0004 24 1 3.1237 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8874 26 1 3.7985 -6.1855 -0.0700 27 1 4.3162 -8.5277 0.2203 28 1 3.4247 -10.8370 0.4165 29 1 1.4388 -12.3724 0.0841 30 1 -1.2790 -10.8106 -0.0225 31 1 -1.0585 -12.6229 -0.2854 32 1 -0.0932 -12.8436 2.0500 33 1 -0.3137 -11.0314 2.3124 34 1 -0.5189 -9.2158 0.1909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119988995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:50 Heat of formation + Delta-G solvation = 13.584739 kcal Electronic energy + Delta-G solvation = -17878.952186 eV Core-core repulsion = 14903.416788 eV Total energy + Delta-G solvation = -2975.535398 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85298 -40.26258 -38.02769 -35.70737 -34.59238 -33.39145 -31.77828 -29.88198 -27.68118 -25.31766 -24.86176 -23.16740 -21.73661 -21.70654 -19.94099 -19.08522 -18.11943 -17.28810 -16.88551 -16.73057 -16.43343 -16.13669 -15.61876 -15.51908 -15.06579 -14.83571 -14.56916 -14.11170 -13.67910 -13.61141 -13.17983 -12.86869 -12.65518 -12.63588 -12.39134 -12.23776 -11.77263 -11.34619 -11.31561 -11.15786 -11.13152 -10.65064 -10.30278 -10.01559 -9.08409 -8.68694 -8.35081 -6.14174 0.05111 0.39440 1.21450 1.43846 1.44216 1.54511 1.61058 2.02984 2.26492 2.74513 2.99075 3.18248 3.19780 3.44823 3.67068 3.90365 3.94834 4.04130 4.04566 4.18750 4.26586 4.30666 4.42096 4.46357 4.73131 4.81862 4.93165 5.06177 5.19100 5.27202 5.28983 5.39467 5.41038 5.81875 6.16644 6.19308 6.97304 7.05790 7.35284 8.74011 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.003020 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.309950 B = 9268.219134 C = 9745.304613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.086 0.914 9 S -0.152 6.152 10 C -0.126 4.126 11 C 0.521 3.479 12 O -0.502 6.502 13 N -0.646 5.646 14 C 0.327 3.673 15 C -0.189 4.189 16 C -0.040 4.040 17 C -0.135 4.135 18 C -0.110 4.110 19 C -0.183 4.183 20 C -0.168 4.168 21 C 0.105 3.895 22 N -0.525 5.525 23 H 0.271 0.729 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.436 0.564 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.269 -24.676 1.140 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.075 5.925 10 C -0.277 4.277 11 C 0.306 3.694 12 O -0.372 6.372 13 N -0.296 5.296 14 C 0.096 3.904 15 C -0.212 4.212 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.219 4.219 20 C -0.205 4.205 21 C -0.052 4.052 22 N -0.240 5.240 23 H 0.080 0.920 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.277 0.723 27 H 0.193 0.807 28 H 0.196 0.804 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.570 -24.071 1.070 25.256 hybrid contribution 2.105 0.997 0.006 2.329 sum 9.674 -23.073 1.076 25.042 Atomic orbital electron populations 1.70187 1.08062 1.28711 1.47933 1.26168 0.95976 1.03445 0.93701 0.84973 0.77758 0.75507 0.79561 1.18545 1.20498 1.18555 1.23177 0.95436 0.91768 1.59004 0.89601 1.85687 1.10395 0.99359 1.97087 1.23366 1.03768 0.93215 1.07345 1.20453 0.86579 0.86590 0.75755 1.90799 1.16805 1.85236 1.44405 1.43419 1.11710 1.02514 1.71978 1.18935 0.89758 0.85746 0.95934 1.21831 1.01521 0.91411 1.06388 1.21616 0.94383 0.97299 0.93279 1.20315 0.94739 0.95225 1.03582 1.20962 0.93447 0.93645 1.04753 1.23152 0.94790 1.04010 0.99973 1.23090 1.02700 1.03643 0.91038 1.22689 1.00868 0.86341 0.95298 1.67562 1.14269 1.25998 1.16160 0.91989 0.86621 0.86540 0.72314 0.80729 0.80411 0.84381 0.89529 0.86538 0.86373 0.90048 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.52 20.55 7.81 87.66 0.68 21.23 16 12 O -0.50 -25.14 14.13 -3.03 -0.04 -25.19 16 13 N -0.65 -18.20 5.39 -308.45 -1.66 -19.86 16 14 C 0.33 9.45 7.42 132.92 0.99 10.43 16 15 C -0.19 -3.44 9.94 22.49 0.22 -3.22 16 16 C -0.04 -0.62 9.88 22.44 0.22 -0.40 16 17 C -0.14 -2.66 5.63 -19.76 -0.11 -2.77 16 18 C -0.11 -1.49 6.06 -11.54 -0.07 -1.56 16 19 C -0.18 -2.50 9.86 30.59 0.30 -2.20 16 20 C -0.17 -2.20 10.17 30.59 0.31 -1.89 16 21 C 0.11 2.94 10.46 84.64 0.89 3.83 16 22 N -0.53 -18.76 7.89 -193.04 -1.52 -20.28 16 23 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 25 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 26 H 0.44 7.76 8.70 -92.71 -0.81 6.96 16 27 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.43 6.20 -2.39 -0.01 1.41 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.15 3.99 6.03 -2.91 -0.02 3.97 16 Total: -1.00 -83.61 312.46 3.23 -80.38 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.32 Total: 16.07 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.98 Total: -10.63 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.90 Total: -96.60 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.19 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -83.61 3.23 -80.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119988995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.960 kcal (2) G-P(sol) polarization free energy of solvation -83.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds