Wall clock time and date at job start Tue Mar 31 2020 00:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46830 * 299.99749 * 3 2 1 6 6 H 1.48497 * 109.47296 * 59.99456 * 3 2 1 7 7 C 1.37870 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00123 * 186.60123 * 7 2 1 9 9 C 1.50706 * 120.00277 * 6.59994 * 7 2 1 10 10 C 1.52995 * 112.99684 * 65.45021 * 9 7 2 11 11 O 1.42899 * 109.47344 * 53.52507 * 10 9 7 12 12 C 1.34995 * 117.00260 * 179.97438 * 11 10 9 13 13 O 1.21713 * 119.99843 * 0.02562 * 12 11 10 14 14 C 1.41285 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.35767 * 119.99973 * 179.73233 * 14 12 11 16 16 C 1.41524 * 119.99705 * 180.27517 * 15 14 12 17 17 C 1.38007 * 126.10509 * 179.97438 * 16 15 14 18 18 C 1.40278 * 106.52349 * 179.97438 * 17 16 15 19 19 C 1.35179 * 107.21433 * 0.02562 * 18 17 16 20 20 O 1.34008 * 109.03918 * 359.76689 * 19 18 17 21 21 C 1.54037 * 113.92525 * 197.38282 * 9 7 2 22 22 O 1.44181 * 85.51491 * 91.65950 * 21 9 7 23 23 C 1.44175 * 93.34058 * 24.18941 * 22 21 9 24 24 H 0.96999 * 120.00163 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47097 * 293.52377 * 10 9 7 26 26 H 1.09000 * 109.46892 * 173.52348 * 10 9 7 27 27 H 1.08000 * 120.00059 * 359.97438 * 14 12 11 28 28 H 1.07990 * 119.99921 * 0.26547 * 15 14 12 29 29 H 1.08000 * 126.73367 * 359.96236 * 17 16 15 30 30 H 1.07998 * 126.39640 * 179.97438 * 18 17 16 31 31 H 1.08005 * 125.48178 * 180.02562 * 19 18 17 32 32 H 1.08991 * 113.86133 * 205.80232 * 21 9 7 33 33 H 1.08992 * 113.86840 * 337.51379 * 21 9 7 34 34 H 1.09002 * 113.86233 * 221.65675 * 23 22 21 35 35 H 1.09004 * 113.98344 * 89.96832 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1081 9 6 1.2586 -2.4949 -0.1489 10 6 0.5851 -2.6443 -1.5145 11 8 1.5519 -2.4416 -2.5471 12 6 1.1173 -2.5401 -3.8214 13 8 -0.0519 -2.7911 -4.0480 14 6 2.0198 -2.3519 -4.8921 15 6 1.5839 -2.4563 -6.1737 16 6 2.4891 -2.2735 -7.2460 17 6 2.1843 -2.3511 -8.5898 18 6 3.3774 -2.1028 -9.2845 19 6 4.3410 -1.8889 -8.3609 20 8 3.8034 -1.9874 -7.1374 21 6 2.0674 -3.7321 0.2846 22 8 1.4689 -3.5289 1.5805 23 6 0.3348 -2.8221 1.0394 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2097 -1.9046 -1.6106 26 1 0.1627 -3.6452 -1.6037 27 1 3.0572 -2.1287 -4.6911 28 1 0.5465 -2.6791 -6.3747 29 1 1.2171 -2.5619 -9.0216 30 1 3.5029 -2.0864 -10.3570 31 1 5.3767 -1.6695 -8.5748 32 1 1.7570 -4.6553 -0.2046 33 1 3.1467 -3.5812 0.2687 34 1 0.0400 -1.9495 1.6223 35 1 -0.5059 -3.4658 0.7802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123164095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:27 Heat of formation + Delta-G solvation = -61.831352 kcal Electronic energy + Delta-G solvation = -20922.815778 eV Core-core repulsion = 17468.964471 eV Total energy + Delta-G solvation = -3453.851307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.73710 -39.96818 -39.05040 -36.03670 -34.17254 -33.24469 -32.87908 -30.11294 -29.13543 -25.71772 -25.33474 -24.74579 -23.47919 -22.08598 -20.90519 -19.37882 -18.92375 -17.82717 -16.90422 -16.52269 -16.27793 -15.78474 -15.61507 -14.92740 -14.84753 -14.44729 -14.31397 -14.09379 -13.22388 -13.03128 -12.94743 -12.66134 -12.36673 -12.10366 -11.87599 -11.57205 -11.00203 -10.76800 -10.73680 -10.45021 -10.23595 -10.12425 -9.89965 -9.56440 -9.35210 -9.02477 -8.74617 -8.28013 -8.13655 -6.16016 -4.18323 0.30942 1.93708 2.51782 2.75311 3.26352 3.34646 3.39063 3.48932 3.58100 4.35502 4.59972 4.69866 4.82133 4.91766 5.10679 5.19791 5.41516 5.48156 5.54428 5.82964 5.84589 5.95807 6.08327 6.20055 6.22552 6.28264 6.33687 6.43255 6.58016 6.85485 6.99678 7.14646 7.30327 7.35398 7.40102 7.80599 8.19417 8.47239 8.78936 9.45324 10.92509 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.004332 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.378153 B = 6462.672462 C = 7170.890602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.080 3.920 11 O -0.318 6.318 12 C 0.486 3.514 13 O -0.526 6.526 14 C -0.165 4.165 15 C -0.003 4.003 16 C -0.002 4.002 17 C -0.168 4.168 18 C -0.220 4.220 19 C -0.021 4.021 20 O -0.162 6.162 21 C 0.028 3.972 22 O -0.389 6.389 23 C 0.050 3.950 24 H 0.264 0.736 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.206 0.794 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -4.053 -15.891 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.032 3.968 10 C 0.005 3.995 11 O -0.233 6.233 12 C 0.334 3.666 13 O -0.420 6.420 14 C -0.184 4.184 15 C -0.021 4.021 16 C -0.051 4.051 17 C -0.187 4.187 18 C -0.239 4.239 19 C -0.091 4.091 20 O -0.057 6.057 21 C -0.049 4.049 22 O -0.307 6.307 23 C -0.027 4.027 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.160 0.840 28 H 0.179 0.821 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.223 0.777 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.956 -4.028 -15.329 16.606 hybrid contribution 0.136 0.971 -0.469 1.087 sum 5.092 -3.056 -15.797 16.877 Atomic orbital electron populations 1.69897 1.05932 1.27085 1.49721 1.24949 0.94928 0.99325 0.94405 0.86433 0.80292 0.83190 0.77566 1.19512 1.20939 1.20953 1.20593 0.93462 0.88320 1.49816 0.91542 1.21118 0.92618 0.94613 0.88433 1.23061 0.91410 0.98736 0.86261 1.86275 1.42858 1.80076 1.14046 1.19804 0.87191 0.74815 0.84814 1.90838 1.19252 1.45728 1.86201 1.21552 1.01288 1.04389 0.91210 1.20666 0.97933 0.94004 0.89489 1.19847 0.82098 1.08239 0.94912 1.22351 1.00201 1.04467 0.91668 1.21769 0.92944 1.08313 1.00890 1.24339 0.99840 1.03925 0.80953 1.84146 1.21973 1.67930 1.31687 1.24093 0.99229 0.97383 0.84196 1.89488 1.37269 1.77752 1.26239 1.23918 0.88527 0.94304 0.95963 0.92640 0.89871 0.94679 0.84016 0.82124 0.82599 0.82988 0.77736 0.92862 0.90382 0.88221 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 11.31 55.43 0.63 -23.69 16 2 C 0.07 1.78 5.25 -17.82 -0.09 1.68 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.48 -12.95 7.92 -34.44 -0.27 -13.23 16 8 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 9 C 0.03 0.80 0.62 -154.58 -0.10 0.71 16 10 C 0.08 1.88 4.58 37.15 0.17 2.05 16 11 O -0.32 -7.17 9.70 -41.30 -0.40 -7.57 16 12 C 0.49 9.72 7.68 31.89 0.24 9.96 16 13 O -0.53 -11.40 15.88 -19.43 -0.31 -11.71 16 14 C -0.17 -2.62 9.55 -39.31 -0.38 -3.00 16 15 C 0.00 -0.03 9.39 -39.22 -0.37 -0.40 16 16 C 0.00 -0.02 6.84 -38.42 -0.26 -0.28 16 17 C -0.17 -1.66 10.90 -38.90 -0.42 -2.09 16 18 C -0.22 -1.86 10.87 -39.90 -0.43 -2.30 16 19 C -0.02 -0.18 12.06 29.64 0.36 0.17 16 20 O -0.16 -1.95 10.18 4.69 0.05 -1.90 16 21 C 0.03 0.61 8.35 37.61 0.31 0.93 16 22 O -0.39 -9.35 12.40 -35.23 -0.44 -9.79 16 23 C 0.05 1.19 7.91 37.61 0.30 1.49 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 25 H 0.08 2.18 7.21 -51.93 -0.37 1.80 16 26 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 27 H 0.14 2.10 7.72 -52.49 -0.41 1.69 16 28 H 0.16 1.99 7.45 -52.49 -0.39 1.60 16 29 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.21 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 34 H 0.10 2.56 7.36 -51.93 -0.38 2.17 16 35 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -30.97 314.55 -5.74 -36.70 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.04 Total: 1.46 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.94 Total: -4.30 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.10 Total: -30.96 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.97 -5.74 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123164095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.127 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds